Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30502
         (671 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.6  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   6.1  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   6.1  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   6.1  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   6.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   6.1  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 208  TSCRVTHGTSAGNSRPLSQH 149
            T+  V+ G+S  + RPLS+H
Sbjct: 1314 TNTTVSSGSSEDHRRPLSEH 1333



 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 361  LCIYHHSLQ*CLQLLTPSTVKL 296
            LC++H  L   L+  TP+ V L
Sbjct: 1097 LCLHHRDLPCVLRASTPAPVVL 1118


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 217 CQGTSCRVTHGTSAGNSRPL 158
           CQGT+  +  G S   S P+
Sbjct: 14  CQGTTGNILRGESLNKSLPI 33


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 133 GGDFYCVGSEVGNYLRLF 186
           GG +  V  +V N LRLF
Sbjct: 75  GGSYSSVSLQVANLLRLF 92


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 217 CQGTSCRVTHGTSAGNSRPL 158
           CQGT+  +  G S   S P+
Sbjct: 14  CQGTTGNILRGESLNKSLPI 33


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 217 CQGTSCRVTHGTSAGNSRPL 158
           CQGT+  +  G S   S P+
Sbjct: 14  CQGTTGNILRGESLNKSLPI 33


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 133 GGDFYCVGSEVGNYLRLF 186
           GG +  V  +V N LRLF
Sbjct: 165 GGSYSSVSLQVANLLRLF 182


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,682
Number of Sequences: 438
Number of extensions: 4720
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)