Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30491
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.20 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.4  
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    25   9.7  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   9.7  

>SPAC1002.20 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 108 FYFRKTSILCCNFITYDVI 52
           F FRK  ILC +F+ Y  I
Sbjct: 65  FIFRKLKILCPSFLNYSFI 83


>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -1

Query: 53  FGAKINEKLNKHYKVI 6
           FGA +N++LN HY+ +
Sbjct: 346 FGAMLNQQLNLHYEAL 361


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 193  QFRLIFHEAWFHMTMAQL 140
            +FRL F  +W H T+A++
Sbjct: 4040 RFRLFFFLSWLHATLAEI 4057


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,394,753
Number of Sequences: 5004
Number of extensions: 44249
Number of successful extensions: 70
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)