Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30491
         (662 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated p...    30   1.7  
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p...    30   1.7  
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p...    30   1.7  
U25119-1|AAA85728.1| 1053|Caenorhabditis elegans Unc-2 protein.        30   1.7  
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ...    30   1.7  
Z81575-5|CAB04631.2|  353|Caenorhabditis elegans Hypothetical pr...    27   9.0  
AF016664-1|AAB66070.2|  324|Caenorhabditis elegans Serpentine re...    27   9.0  

>U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated
           protein 2, isoform a protein.
          Length = 1538

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 604 FFNVLDGVKVNSNLYTVGTAPLAANVGKRSNCIQ 503
           F+N+LDG+ V   L+  G A    + GK  N I+
Sbjct: 803 FWNILDGIVVTCALFAFGFAGTEGSAGKNLNTIK 836


>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
           protein 2, isoform c protein.
          Length = 1926

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 604 FFNVLDGVKVNSNLYTVGTAPLAANVGKRSNCIQ 503
           F+N+LDG+ V   L+  G A    + GK  N I+
Sbjct: 803 FWNILDGIVVTCALFAFGFAGTEGSAGKNLNTIK 836


>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
            protein 2, isoform b protein.
          Length = 2027

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 604  FFNVLDGVKVNSNLYTVGTAPLAANVGKRSNCIQ 503
            F+N+LDG+ V   L+  G A    + GK  N I+
Sbjct: 922  FWNILDGIVVTCALFAFGFAGTEGSAGKNLNTIK 955


>U25119-1|AAA85728.1| 1053|Caenorhabditis elegans Unc-2 protein.
          Length = 1053

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 604 FFNVLDGVKVNSNLYTVGTAPLAANVGKRSNCIQ 503
           F+N+LDG+ V   L+  G A    + GK  N I+
Sbjct: 409 FWNILDGIVVTCALFAFGFAGTEGSAGKNLNTIK 442


>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
            activated calciumchannel alpha-1 subunit protein.
          Length = 2027

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 604  FFNVLDGVKVNSNLYTVGTAPLAANVGKRSNCIQ 503
            F+N+LDG+ V   L+  G A    + GK  N I+
Sbjct: 922  FWNILDGIVVTCALFAFGFAGTEGSAGKNLNTIK 955


>Z81575-5|CAB04631.2|  353|Caenorhabditis elegans Hypothetical
           protein R08H2.5 protein.
          Length = 353

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/67 (25%), Positives = 32/67 (47%)
 Frame = +3

Query: 399 YLCLPVKKI*PCVLIASF*NLSYLVNFSF*NLTQICMQLERLPTFAARGAVPTVYKFELT 578
           Y+ LP+  +  CV + S+  +  L+  S   + +IC  L  +  F +R +     +F +T
Sbjct: 87  YIFLPMSAV-SCVGLLSWLGVPTLLQLSIIIVVEICAALSYIYLFESRASSLHTNRFRIT 145

Query: 579 FTPSRTL 599
            T  R +
Sbjct: 146 STKYRII 152


>AF016664-1|AAB66070.2|  324|Caenorhabditis elegans Serpentine
           receptor, class i protein77 protein.
          Length = 324

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 168 PGFI*QWHSYNKLNMILITFFYFRKTSILCCNFITYDVI 52
           P F+    S N + + L+T F+      LC  F  YD+I
Sbjct: 181 PNFVVYMKSQNTI-IFLVTLFFAASFGFLCLCFTIYDII 218


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,067,529
Number of Sequences: 27780
Number of extensions: 245411
Number of successful extensions: 480
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)