Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30491
         (662 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g17930.1 68415.m02076 FAT domain-containing protein / phospha...    29   2.1  
At4g36080.1 68417.m05136 FAT domain-containing protein / phospha...    29   2.8  
At4g39550.1 68417.m05592 kelch repeat-containing F-box family pr...    29   3.6  

>At2g17930.1 68415.m02076 FAT domain-containing protein /
            phosphatidylinositol 3- and 4-kinase family protein
            contains Pfam profiles PF02259 FAT domain, PF00454
            Phosphatidylinositol 3- and 4-kinase, PF02260: FATC
            domain
          Length = 3795

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/52 (30%), Positives = 31/52 (59%)
 Frame = +2

Query: 86   IEVLRK*KKVISIMFNLL*LCHCHMKPGLVKD*TKLQLFYVLEISERYP*NI 241
            +  LR  K  ++++F++L +   H +     D T L+ FY++E++E YP N+
Sbjct: 1623 LNYLRHEKSEVNVLFDILSIFLFHSRI----DYTFLKEFYIIEVAEGYPPNM 1670


>At4g36080.1 68417.m05136 FAT domain-containing protein /
            phosphatidylinositol 3- and 4-kinase family protein
            contains Pfam profiles PF00454: Phosphatidylinositol 3-
            and 4-kinase, PF02259: FAT domain, PF02260: FATC domain
          Length = 3839

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/52 (30%), Positives = 31/52 (59%)
 Frame = +2

Query: 86   IEVLRK*KKVISIMFNLL*LCHCHMKPGLVKD*TKLQLFYVLEISERYP*NI 241
            +  LR  K  ++++F++L +   H +     D T L+ FY++E++E YP N+
Sbjct: 1679 LNYLRHEKSEMNVLFDVLLIFLFHSRI----DYTFLREFYIIEVAEEYPPNM 1726


>At4g39550.1 68417.m05592 kelch repeat-containing F-box family
           protein similar to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 392

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +1

Query: 58  VICNEVATENRGFAEIKKSDKYHV*FVITVPLSYE 162
           ++C  +A E R   EI    ++H   V+TVPLSYE
Sbjct: 350 ILCAVIALERRNSEEIWGKVEWHD-AVLTVPLSYE 383


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,905,169
Number of Sequences: 28952
Number of extensions: 213683
Number of successful extensions: 360
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)