Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30489
(368 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch... 29 0.17
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo... 29 0.17
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c... 28 0.40
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB... 27 0.70
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 27 1.2
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 27 1.2
SPBC800.14c |||DUF1772 family protein|Schizosaccharomyces pombe|... 26 1.6
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p... 26 1.6
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 26 1.6
SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch... 26 1.6
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|... 26 1.6
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei... 26 2.1
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo... 25 2.8
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac... 25 3.7
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar... 24 6.5
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual 24 8.6
SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein Nfs1|S... 24 8.6
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo... 24 8.6
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ... 24 8.6
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M... 24 8.6
>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 29.5 bits (63), Expect = 0.17
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 68 DRVWHRALLSKLPSYGIPEGLCKWIASFLDG 160
D V A S+LP YGI GL W A++ G
Sbjct: 72 DYVLAHAHSSELPRYGIKWGLANWTAAYATG 102
>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 29.5 bits (63), Expect = 0.17
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 68 DRVWHRALLSKLPSYGIPEGLCKWIASFLDG 160
D V A S+LP YGI GL W A++ G
Sbjct: 72 DYVLAHAHSSELPRYGIKWGLANWTAAYATG 102
>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1142
Score = 28.3 bits (60), Expect = 0.40
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -3
Query: 267 IYRMKSVGESTEPCGTPALMV 205
+YR KSV ES EP G P L +
Sbjct: 140 LYREKSVEESDEPSGIPILFI 160
>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 588
Score = 27.5 bits (58), Expect = 0.70
Identities = 12/55 (21%), Positives = 27/55 (49%)
Frame = +2
Query: 194 SDTMTINAGVPQGSVLSPTLFILYINDMLSIDGMHCYADDSTGDARYIGHQSLSR 358
S +T+ + VP+ S FI Y + +LSI + C+ ++ ++++ +
Sbjct: 39 SSRLTVRSAVPEKSAFGSIEFIFYFSVILSILTIACFKIHYVSSPKHPNYKNIEK 93
>SPBC12C2.02c |ste20|ste16|sterility protein
Ste20|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1309
Score = 26.6 bits (56), Expect = 1.2
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 137 WIASFLDGRSITVVVDGDCSDTMTIN-AGVPQGS 235
W SFL G+ +TVV + S+ IN +P GS
Sbjct: 519 WSESFLAGKRLTVVKNQAVSNDDNINMVNIPDGS 552
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 26.6 bits (56), Expect = 1.2
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 218 GVPQGSVLSPTLFILYINDML 280
G+PQGS+LS L Y+ D++
Sbjct: 703 GIPQGSILSSFLCHFYMEDLI 723
>SPBC800.14c |||DUF1772 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 160
Score = 26.2 bits (55), Expect = 1.6
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 276 MSLIYRMKSVGESTEPCGTPALMVMVSEQ 190
MSL+Y +SVG T PCG+ + ++ Q
Sbjct: 1 MSLVYLFQSVGILT-PCGSAGAIAYITSQ 28
>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 749
Score = 26.2 bits (55), Expect = 1.6
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 231 VRCSPPRFSSCISMTCCLLMECIAMQMIAR 320
V+ S P S+C+ + C LL E +AMQ+ R
Sbjct: 210 VKFSRPEDSACLPLHC-LLREVLAMQVFKR 238
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 26.2 bits (55), Expect = 1.6
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 218 GVPQGSVLSPTLFILYINDM 277
G PQGS++SP L +Y++ +
Sbjct: 420 GTPQGSIVSPILANIYLHQL 439
>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 244
Score = 26.2 bits (55), Expect = 1.6
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -1
Query: 143 RSTCRDPRGFRKMVTSIEVPYARPCRRPSRYQGSQQEPRPCSPR 12
R RD R R+ S Y+ P RR RY+ ++ R SPR
Sbjct: 37 RRNYRDERSSRRYEDSQRRDYS-PARRRDRYERHRESVREESPR 79
>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 664
Score = 26.2 bits (55), Expect = 1.6
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = -3
Query: 186 PSTTTVMLRPSKKLA--IHLQRPSGIP*DGNFDRSALCQTLSKAFAISRLTARASPLLSK 13
PS+T + PS A +H Q+P D + D +A+ + +RL+ PLLS
Sbjct: 207 PSSTVSSIAPSTLEAGNLHSQQPPKFSVDSSVDDNAITPRKPFSKIPNRLSPSTQPLLSN 266
Query: 12 A 10
+
Sbjct: 267 S 267
>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
Vps41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 886
Score = 25.8 bits (54), Expect = 2.1
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 227 QGSVLSPTLFILYINDMLSIDGMHCY 304
+ S L+ +L LY+ D + ID H Y
Sbjct: 502 KSSTLTESLAFLYLEDNMPIDAFHLY 527
>SPBC1604.20c |tea2|klp4|kinesin-like protein
Tea2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 628
Score = 25.4 bits (53), Expect = 2.8
Identities = 21/66 (31%), Positives = 33/66 (50%)
Frame = -3
Query: 198 SEQSPSTTTVMLRPSKKLAIHLQRPSGIP*DGNFDRSALCQTLSKAFAISRLTARASPLL 19
+ Q S + V L S++ + H +R +G F +L L+ ISRL+A A+P L
Sbjct: 351 TSQISSLSLVDLAGSERASAHHERRK----EGAFINKSL---LTLGTVISRLSAAANPSL 403
Query: 18 SKASAH 1
+ S H
Sbjct: 404 TSNSGH 409
>SPAC1751.01c |gti1||gluconate transporter inducer
Gti1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 25.0 bits (52), Expect = 3.7
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -3
Query: 240 STEPCGTPALMVMVSEQSPSTTTVMLRPSKKLAIHLQRP 124
S++P GTP + SPSTT V + I+ + P
Sbjct: 200 SSKPTGTPFVPKSPPSSSPSTTNVSNASTSSAPINPRAP 238
>SPBC19C7.08c |||leucine carboxyl
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 681
Score = 24.2 bits (50), Expect = 6.5
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 72 GSGIGHFYRSYHLTESPRVSASGSLAFW 155
G +GH Y + +SPR S S + +W
Sbjct: 37 GFTVGHSYYQPFIQKSPRRSPSVNRGYW 64
>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
Length = 629
Score = 23.8 bits (49), Expect = 8.6
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = +2
Query: 272 DMLSIDGMHCYADDSTGDARYIGHQS 349
D + + G C+ DDS+ + + HQ+
Sbjct: 267 DDVDLIGWECFFDDSSDELNTLSHQA 292
>SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein
Nfs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 498
Score = 23.8 bits (49), Expect = 8.6
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 255 SSCISMTCCLLMECIAMQMIARGMRDISAIRVSLGAW 365
S +S CLL A+ + R +DI+ +R SLG +
Sbjct: 3 SLMLSRARCLLELRSALFFVKRESQDINNVRQSLGVY 39
>SPBC13G1.08c |ash2||Ash2-trithorax family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 23.8 bits (49), Expect = 8.6
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -3
Query: 96 DRSALCQTLSKAFAISR 46
D SALC T+ K F ++R
Sbjct: 364 DHSALCATVEKGFRMAR 380
>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1026
Score = 23.8 bits (49), Expect = 8.6
Identities = 9/29 (31%), Positives = 14/29 (48%)
Frame = +2
Query: 128 LCKWIASFLDGRSITVVVDGDCSDTMTIN 214
LC+W+ D R+ + DG C +N
Sbjct: 91 LCQWLLKTCDRRATLQLCDGLCLKLFRLN 119
>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 535
Score = 23.8 bits (49), Expect = 8.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -3
Query: 324 SPVLSSA*QCIPSIDSMSLIYRMKSVGESTEP 229
SP L + CI I +L+Y +G++ EP
Sbjct: 292 SPPLQAVLFCIRRISFFNLLYEKFVIGKTKEP 323
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,628,039
Number of Sequences: 5004
Number of extensions: 33107
Number of successful extensions: 101
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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