Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30489
(368 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g59700.1 68414.m06716 glutathione S-transferase, putative sim... 28 1.7
At1g59670.1 68414.m06711 glutathione S-transferase, putative sim... 28 1.7
At3g21150.1 68416.m02672 zinc finger (B-box type) family protein... 27 2.9
At3g08660.1 68416.m01006 phototropic-responsive protein, putativ... 27 2.9
At5g08270.1 68418.m00974 expressed protein 27 3.9
At1g60090.1 68414.m06770 glycosyl hydrolase family 1 protein con... 27 3.9
At5g14950.1 68418.m01754 glycosyl hydrolase family 38 protein si... 27 5.2
At3g03870.2 68416.m00400 expressed protein predicted using genef... 27 5.2
At3g03870.1 68416.m00399 expressed protein predicted using genef... 27 5.2
At1g28110.2 68414.m03444 serine carboxypeptidase S10 family prot... 27 5.2
At1g28110.1 68414.m03443 serine carboxypeptidase S10 family prot... 27 5.2
At4g39550.1 68417.m05592 kelch repeat-containing F-box family pr... 26 6.8
At2g40460.1 68415.m04993 proton-dependent oligopeptide transport... 26 6.8
At2g35770.1 68415.m04389 serine carboxypeptidase S10 family prot... 26 6.8
At1g54310.2 68414.m06192 expressed protein 26 6.8
At1g49890.1 68414.m05593 expressed protein contains Pfam domain,... 26 6.8
At1g45191.2 68414.m05184 glycosyl hydrolase family 1 protein Sin... 26 6.8
At5g66120.2 68418.m08330 3-dehydroquinate synthase, putative sim... 26 9.0
At5g66120.1 68418.m08329 3-dehydroquinate synthase, putative sim... 26 9.0
At3g60980.1 68416.m06824 pentatricopeptide (PPR) repeat-containi... 26 9.0
At2g38400.1 68415.m04717 alanine--glyoxylate aminotransferase, p... 26 9.0
At1g48050.1 68414.m05356 Ku80 family protein identical to Ku80-l... 26 9.0
At1g01220.1 68414.m00036 GHMP kinase-related contains similarity... 26 9.0
>At1g59700.1 68414.m06716 glutathione S-transferase, putative
similar to glutathione S-transferase GB:AAF29773
GI:6856103 from [Gossypium hirsutum]
Length = 234
Score = 28.3 bits (60), Expect = 1.7
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 44 SLDIAKAFDRVWHRALLSKLPSYGIPEGLCKWIASFLDGR 163
SL+I + D W+ + S LPS+ L ++ + F+D +
Sbjct: 70 SLNIVEYIDETWNSSAPSILPSHPYDRALARFWSDFVDNK 109
>At1g59670.1 68414.m06711 glutathione S-transferase, putative
similar to glutathione S-transferase GB:AAF29773
GI:6856103 from [Gossypium hirsutum]
Length = 233
Score = 28.3 bits (60), Expect = 1.7
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +2
Query: 35 LAVSLDIAKAFDRVWHRALLSKLPSYGIPEGLCKWIASFLDGR 163
+ VSL+I + D W+ + S LPS+ L ++ + F+D +
Sbjct: 67 VCVSLNIVEYIDETWNSSGSSILPSHPYDRALARFWSVFVDDK 109
>At3g21150.1 68416.m02672 zinc finger (B-box type) family protein
contains Pfam profile:PF01760 CONSTANS family zinc
finger
Length = 225
Score = 27.5 bits (58), Expect = 2.9
Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = +3
Query: 243 PPRFSSCI---SMTCCLLMECIAMQMIARGMRDISAIR 347
PPR + C S +CC ++C++ ++ RD++ R
Sbjct: 66 PPRTTCCSESSSSSCCSSLDCVSSSELSSTTRDVNRAR 103
>At3g08660.1 68416.m01006 phototropic-responsive protein, putative
contains similarity to root phototropism RPT2
[Arabidopsis thaliana] gi|6959488|gb|AAF33112, a signal
transducer of phototropic response PMID:10662859
Length = 582
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -2
Query: 343 MADISRIP-RAIICIAMHSINRQHVIDIQDEKRGGEHRTLWNASVNGHGI 197
+A+ IP R + IAM++ +Q V + +E +G + +W ++ GI
Sbjct: 158 IAETYEIPDRCVEAIAMNACRKQLVSGLSEELKGRDCLEMWTEELSALGI 207
>At5g08270.1 68418.m00974 expressed protein
Length = 386
Score = 27.1 bits (57), Expect = 3.9
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = -2
Query: 274 VIDIQDEKRGGEHRTLWNASVNGHGIRTVTVYNDRDAPPIQK-ASDPL 134
VI+ Q RGG R +WN S IRT + + + K S PL
Sbjct: 217 VINAQPWGRGGISREVWNGSFTTPEIRTEATTTENSSDKVWKMLSRPL 264
>At1g60090.1 68414.m06770 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to hydroxyisourate hydrolase (GI:19569603)
[Glycine max]
Length = 512
Score = 27.1 bits (57), Expect = 3.9
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 244 GEHRTLWNASVNGHGIRTVTVYNDRDAPP 158
G H LW ++N I ++ YND D PP
Sbjct: 175 GNHVKLWT-TINEANIFSIGGYNDGDTPP 202
>At5g14950.1 68418.m01754 glycosyl hydrolase family 38 protein
similar to alpha-mannosidase II SP:P27046 from [Mus
musculus]
Length = 1173
Score = 26.6 bits (56), Expect = 5.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -2
Query: 244 GEHRTLWNASVNGHGIRTVTVYN 176
G HR W AS+ G+RT + N
Sbjct: 697 GRHRLYWKASIPALGLRTYFIAN 719
>At3g03870.2 68416.m00400 expressed protein predicted using
genefinder
Length = 266
Score = 26.6 bits (56), Expect = 5.2
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -2
Query: 283 RQHVIDIQDEK-RGGEHRTLWNASVNGHG 200
++ V++ +DE GGE LW A +NG G
Sbjct: 156 KEVVLEEEDEDGSGGERLNLWKAGLNGIG 184
>At3g03870.1 68416.m00399 expressed protein predicted using
genefinder
Length = 234
Score = 26.6 bits (56), Expect = 5.2
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -2
Query: 283 RQHVIDIQDEK-RGGEHRTLWNASVNGHG 200
++ V++ +DE GGE LW A +NG G
Sbjct: 156 KEVVLEEEDEDGSGGERLNLWKAGLNGIG 184
>At1g28110.2 68414.m03444 serine carboxypeptidase S10 family protein
similar to H.vulgare gene encoding serine
carboxypeptidase II, CP-MII GI:1731989
Length = 461
Score = 26.6 bits (56), Expect = 5.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 297 CIPSIDSMSLIYRMKSVGESTEPC 226
CIPS+ S S + VGES + C
Sbjct: 286 CIPSVLSQSKVVSPNQVGESVDVC 309
>At1g28110.1 68414.m03443 serine carboxypeptidase S10 family protein
similar to H.vulgare gene encoding serine
carboxypeptidase II, CP-MII GI:1731989
Length = 461
Score = 26.6 bits (56), Expect = 5.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 297 CIPSIDSMSLIYRMKSVGESTEPC 226
CIPS+ S S + VGES + C
Sbjct: 286 CIPSVLSQSKVVSPNQVGESVDVC 309
>At4g39550.1 68417.m05592 kelch repeat-containing F-box family
protein similar to SKP1 interacting partner 6
[Arabidopsis thaliana] GI:10716957; contains Pfam
profiles PF01344: Kelch motif, PF00646: F-box domain
Length = 392
Score = 26.2 bits (55), Expect = 6.8
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = -3
Query: 321 PVLSSA*QCIPSIDSMSLIYRMKSVGESTEPCGTPALMVMVSEQSPSTTTVMLRPSKKL 145
P LS + S+ + +Y+ +S+ TE C L S+ +P T+ L+P++ L
Sbjct: 45 PTLSLVSKSFRSLIASPDLYKTRSLLGRTESCLYVCLQEKDSDPNPRWFTLCLKPNRTL 103
>At2g40460.1 68415.m04993 proton-dependent oligopeptide transport
(POT) family protein contains Pfam profile: PF00854 POT
family
Length = 583
Score = 26.2 bits (55), Expect = 6.8
Identities = 9/32 (28%), Positives = 20/32 (62%)
Frame = +3
Query: 66 STGSGIGHFYRSYHLTESPRVSASGSLAFWMG 161
++G G+G+F S+ +T ++++ G W+G
Sbjct: 488 TSGIGLGNFLNSFLVTMIDKITSKGGGKSWIG 519
>At2g35770.1 68415.m04389 serine carboxypeptidase S10 family protein
similar to Serine carboxypeptidase II precursor
(Carboxypeptidase D) (CP-MII) (SP:P08818) [Hordeum
vulgare]
Length = 462
Score = 26.2 bits (55), Expect = 6.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 102 YHLTESPRVSASGSLAFWMGG 164
Y LTE+PR S + L W+ G
Sbjct: 69 YWLTEAPRPSGTKPLVLWLNG 89
>At1g54310.2 68414.m06192 expressed protein
Length = 454
Score = 26.2 bits (55), Expect = 6.8
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 143 ASFLDGRSITVVVDGDCSDTMTINAGVPQGSVLSPTL 253
A+ + GR ITVV + + ++ PQG LS L
Sbjct: 414 AAAMSGRKITVVREAGAASDHPLDPSYPQGQYLSNLL 450
>At1g49890.1 68414.m05593 expressed protein contains Pfam domain,
PF04484: Family of unknown function (DUF566)
Length = 659
Score = 26.2 bits (55), Expect = 6.8
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +3
Query: 54 SRRPSTGSG-IGH-FYRSYHLTESPRVSASGSLAFWMGGASRSL 179
S R GSG +G + + ESPRVS +G L+ +GG L
Sbjct: 222 SDRGKLGSGFVGRSMLHNSMIDESPRVSVNGRLSLDLGGRDEYL 265
>At1g45191.2 68414.m05184 glycosyl hydrolase family 1 protein Since
this genomic sequence region is unfinished, the
annotated gene may be missing a stop codon or start
codon
Length = 487
Score = 26.2 bits (55), Expect = 6.8
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -2
Query: 244 GEHRTLWNASVNGHGIRTVTVYNDRDAPPIQKASDPLAETLGDS 113
G H W ++N I T+ YND ++PP + + TLG+S
Sbjct: 180 GNHVKFWT-TINEANIFTIGGYNDGNSPPGRCSFPGRNCTLGNS 222
>At5g66120.2 68418.m08330 3-dehydroquinate synthase, putative
similar to aroB [Neisseria gonorrhoeae][GI:2661441];
contains 3-dehydroquinate synthase domain PF01761
Length = 442
Score = 25.8 bits (54), Expect = 9.0
Identities = 17/60 (28%), Positives = 25/60 (41%)
Frame = -2
Query: 352 ETLMADISRIPRAIICIAMHSINRQHVIDIQDEKRGGEHRTLWNASVNGHGIRTVTVYND 173
+ + A ++R P A+ S + + QDEK G TL GH I T Y +
Sbjct: 281 KNIEALLARDPAALAFAIKRSCENKADVVSQDEKESGLRATLNLGHTFGHAIETGFGYGE 340
>At5g66120.1 68418.m08329 3-dehydroquinate synthase, putative
similar to aroB [Neisseria gonorrhoeae][GI:2661441];
contains 3-dehydroquinate synthase domain PF01761
Length = 338
Score = 25.8 bits (54), Expect = 9.0
Identities = 17/60 (28%), Positives = 25/60 (41%)
Frame = -2
Query: 352 ETLMADISRIPRAIICIAMHSINRQHVIDIQDEKRGGEHRTLWNASVNGHGIRTVTVYND 173
+ + A ++R P A+ S + + QDEK G TL GH I T Y +
Sbjct: 177 KNIEALLARDPAALAFAIKRSCENKADVVSQDEKESGLRATLNLGHTFGHAIETGFGYGE 236
>At3g60980.1 68416.m06824 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 412
Score = 25.8 bits (54), Expect = 9.0
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -3
Query: 330 RASPVLSSA*QCIPSIDSMSLIYRMKSVGESTEPCGTPALMVMVSEQSPSTTTV 169
R+ ++S+ C PS + + Y ++ VG+ L V S +S STTT+
Sbjct: 20 RSEDIMSNP-DCRPSDLCLRVSYLIRCVGDLDTAAKYARLAVFTSIKSESTTTI 72
>At2g38400.1 68415.m04717 alanine--glyoxylate aminotransferase,
putative / beta-alanine-pyruvate aminotransferase,
putative / AGT, putative similar to SP|Q64565
Alanine--glyoxylate aminotransferase 2, mitochondrial
precursor (EC 2.6.1.44) (AGT 2) (Beta-alanine-pyruvate
aminotransferase) {Rattus norvegicus}; contains Pfam
profile PF00202: aminotransferase, class III
Length = 477
Score = 25.8 bits (54), Expect = 9.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 239 LSPTLFILYINDMLSIDGMHCYADDSTGDARYI 337
LSP++F LY + +DG Y D +G RY+
Sbjct: 69 LSPSMFCLYRKPLNIVDGKMQYLFDESG-RRYL 100
>At1g48050.1 68414.m05356 Ku80 family protein identical to Ku80-like
protein [Arabidopsis thaliana] GI:12006422; contains
Pfam profiles: PF02197 Regulatory subunit of type II PKA
R-subunit, PF02735: Ku70/Ku80 beta-barrel domain,
PF03731: Ku70/Ku80 N-terminal alpha/beta domain,
PF03730: Ku70/Ku80 C-terminal arm
Length = 680
Score = 25.8 bits (54), Expect = 9.0
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -2
Query: 88 CPMPDPVEGLRDIKAHSKSLALALQG 11
CP DP EG +D + + ++ +A +G
Sbjct: 131 CPTKDPFEGTKDDQVSTIAMKMAAEG 156
>At1g01220.1 68414.m00036 GHMP kinase-related contains similarity to
L-fucose kinase [Homo sapiens] gi|21212956|emb|CAD29647
Length = 1055
Score = 25.8 bits (54), Expect = 9.0
Identities = 16/74 (21%), Positives = 31/74 (41%)
Frame = +2
Query: 38 AVSLDIAKAFDRVWHRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTMTINA 217
A +L+ A R + + P + G CKW+ F+ + + ++ G D+ +
Sbjct: 84 AATLNAIYALARHYEKLGFDLGPEMEVANGACKWV-RFISAKHVLMLHAG--GDSKRVPW 140
Query: 218 GVPQGSVLSPTLFI 259
P G V P ++
Sbjct: 141 ANPMGKVFLPLPYL 154
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,000,023
Number of Sequences: 28952
Number of extensions: 193544
Number of successful extensions: 578
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 487896136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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