Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30485
         (380 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   3.1  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   3.1  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    20   7.3  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    20   9.6  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +2

Query: 113 HKKKNHKYICNNKD 154
           H ++  KY+C N+D
Sbjct: 327 HNEQLRKYLCKNED 340


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +2

Query: 113 HKKKNHKYICNNKD 154
           H ++  KY+C N+D
Sbjct: 219 HNEQLRKYLCKNED 232


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 113 HKKKNHKYICNNKDFINFFRLNAPPVNLR 199
           H  KN KY+     F +F  L    +N+R
Sbjct: 15  HSMKNFKYLKVLVTFAHFICLFPITINIR 43


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = -1

Query: 146 YCRYIYGFF 120
           YC Y Y FF
Sbjct: 113 YCYYYYAFF 121


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,977
Number of Sequences: 336
Number of extensions: 1735
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  7908675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)