Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30485
         (380 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    26   2.3  
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy...    25   3.0  
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha...    25   5.3  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    24   7.0  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    24   7.0  
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc...    24   9.3  

>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
            Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 12/50 (24%), Positives = 24/50 (48%)
 Frame = +2

Query: 125  NHKYICNNKDFINFFRLNAPPVNLRIWS*RSAHWRHRFVTHVGEPLTTHS 274
            +HK+    K  ++FF       ++ I+S  S H   RF+  + + +  H+
Sbjct: 1134 SHKFFDKIKKSLSFFNFKRKEASINIFSVASGHLYERFLYIMTKSVIEHT 1183


>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 465

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 210 SVVLIGGIDLLHMWVNLSPPTQLIVAT 290
           SVV++GG+D++   V LS    ++V T
Sbjct: 145 SVVIVGGMDMVTQAVALSKKPHVLVCT 171


>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 453

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 8/25 (32%), Positives = 18/25 (72%)
 Frame = +3

Query: 216 VLIGGIDLLHMWVNLSPPTQLIVAT 290
           +++GG+D++   ++LS    ++VAT
Sbjct: 108 LIVGGMDMIRQSIDLSKRPHVVVAT 132


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -3

Query: 177 FKRKKLIKSL-LLQIYLWFFFLCN*LIYSCFEPH 79
           F  +KL+    +   +L F+F+CN   YS   P+
Sbjct: 601 FAIEKLVNFFSMANFFLAFYFVCNATSYSSLNPY 634


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 11/22 (50%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
 Frame = +2

Query: 320  LLLPTLENEVIILT--VEYKIY 379
            +LLPT+EN + +LT   E+KI+
Sbjct: 1310 VLLPTMENMITVLTEKPEHKIF 1331


>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 152 LYYCRYIYGFFFCVTS*FTLASNPI 78
           LYY      F +CV + FT+ +N +
Sbjct: 141 LYYIYVAVSFIYCVMAFFTIFNNHV 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,495,092
Number of Sequences: 5004
Number of extensions: 26728
Number of successful extensions: 60
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)