Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30485
         (380 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1339 + 26252609-26252925,26253025-26253227,26253379-262535...    27   3.8  
01_03_0085 + 12310675-12311354,12311475-12311579,12311755-123118...    26   8.7  

>08_02_1339 +
           26252609-26252925,26253025-26253227,26253379-26253536,
           26253802-26253870,26253980-26254461,26254558-26254766,
           26254865-26254901,26254991-26255075,26255186-26255269,
           26255344-26255412,26255520-26255663
          Length = 618

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +3

Query: 201 FGVSVVLIGGIDLLHMWVNLSPPTQLIVATINSWAPNN 314
           FG S++ + GI+L+H WV  + P   I  T+ S++ ++
Sbjct: 418 FGRSLICVLGIELVHGWV--ANPEDNIYETVKSFSSDD 453


>01_03_0085 +
           12310675-12311354,12311475-12311579,12311755-12311877,
           12312206-12312376,12312472-12312601,12313003-12313058,
           12313602-12313704,12313705-12313914,12314122-12314253
          Length = 569

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 207 VSVVLIGGIDLLHMWVNLSPPTQLIVATINS 299
           +S  LIG  DL HM VNL    +++VA+  S
Sbjct: 442 LSASLIGHFDLCHMQVNLVDWLKMMVASRRS 472


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,911,135
Number of Sequences: 37544
Number of extensions: 150425
Number of successful extensions: 201
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)