Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30485
         (380 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006696-4|AAF39985.1|  215|Caenorhabditis elegans Hypothetical ...    27   3.4  
Z68227-8|CAA92513.1|  275|Caenorhabditis elegans Hypothetical pr...    27   6.0  

>AC006696-4|AAF39985.1|  215|Caenorhabditis elegans Hypothetical
           protein W08E12.6 protein.
          Length = 215

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 264 PPTQLIVATINSWAPNNNTCCYLL*KMR 347
           PP  ++  ++   APNN +CC  L + R
Sbjct: 164 PPAPILFGSVTCCAPNNYSCCGSLFRKR 191


>Z68227-8|CAA92513.1|  275|Caenorhabditis elegans Hypothetical
           protein F49C12.10 protein.
          Length = 275

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = -3

Query: 159 IKSLLLQIYLWFF 121
           I SLLLQ++LWFF
Sbjct: 7   ISSLLLQLWLWFF 19


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,203,933
Number of Sequences: 27780
Number of extensions: 148472
Number of successful extensions: 269
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)