Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30485
         (380 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   1.2  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   2.8  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   2.8  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   2.8  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   2.8  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   2.8  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   4.9  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    20   8.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   8.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   8.5  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 262 ERFTHMCNKSMPPMSTTLTPNS 197
           + F    NK++P + +TLT NS
Sbjct: 665 DSFIEAPNKTLPSLPSTLTKNS 686


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 110 LHKKKNHKYICNNKDFIN 163
           +H   N+KY  NN ++ N
Sbjct: 90  IHNNNNYKYNYNNNNYNN 107


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 110 LHKKKNHKYICNNKDFIN 163
           +H   N+KY  NN ++ N
Sbjct: 90  IHNNNNYKYNYNNNNYNN 107


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 110 LHKKKNHKYICNNKDFIN 163
           +H   N+KY  NN ++ N
Sbjct: 90  IHNNNNYKYNYNNNNYNN 107


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 110 LHKKKNHKYICNNKDFIN 163
           +H   N+KY  NN ++ N
Sbjct: 90  IHNNNNYKYNYNNNNYNN 107


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 110 LHKKKNHKYICNNKDFIN 163
           +H   N+KY  NN ++ N
Sbjct: 323 IHNNNNYKYNYNNNNYNN 340


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +2

Query: 110 LHKKKNHKYICNNK 151
           +H   N+KY  NNK
Sbjct: 90  IHNNNNYKYNYNNK 103


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 23  FRFSRKSLRYFKSITNHY*W 82
           F+ ++K   +  SI NHY W
Sbjct: 94  FKNAKKVTFHEMSIPNHYLW 113


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 232  MPPMSTTLTPNS 197
            +PP +T L+PNS
Sbjct: 1501 IPPAATFLSPNS 1512


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 232  MPPMSTTLTPNS 197
            +PP +T L+PNS
Sbjct: 1497 IPPAATFLSPNS 1508


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,675
Number of Sequences: 438
Number of extensions: 1722
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9300375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)