Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30480
         (737 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0662 + 5714108-5714147,5714336-5715669,5716482-5716673,571...    32   0.41 
07_03_0590 + 19786960-19787136,19787198-19787272,19787676-197881...    29   5.1  
01_05_0812 + 25444351-25444658,25444967-25445231,25445303-254453...    29   5.1  
01_03_0200 + 13744735-13745037,13745071-13745610,13745704-137458...    28   8.9  

>08_01_0662 +
           5714108-5714147,5714336-5715669,5716482-5716673,
           5716769-5716958,5717398-5717477
          Length = 611

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +1

Query: 118 IKRLTSRRSPRAHAHTHAPMDY*FLCVYKPTSVMLRHLKKC 240
           ++ L+S RS    AH+   + Y F CVY    VM+R L++C
Sbjct: 441 LRSLSSARSLELLAHSGESIKY-FACVYTAKVVMVRELRRC 480


>07_03_0590 +
           19786960-19787136,19787198-19787272,19787676-19788173,
           19788605-19788970,19788995-19789009
          Length = 376

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = -3

Query: 174 RSVRVCMCAWGPSRSKPFNVRTSTQVSEVSARRCVRATTERANKQLFGPHTN 19
           R  + C C +G S +     +T T +   +A RC +   E    +LFG H N
Sbjct: 111 RYFKNCGC-YGMSWNLTITAQTLTCMVSFNALRCAKVVLEGRAPELFGMHAN 161


>01_05_0812 +
           25444351-25444658,25444967-25445231,25445303-25445384,
           25446139-25446212,25446308-25446368,25446482-25446624
          Length = 310

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 408 LKLIALEHLNKTMVSWKTIV 467
           LKL  L+H+NK + SW T++
Sbjct: 120 LKLTVLQHMNKGIFSWATLI 139


>01_03_0200 +
           13744735-13745037,13745071-13745610,13745704-13745862,
           13748992-13749123,13749282-13749472,13749541-13749792,
           13750248-13750323,13750411-13750602,13750688-13750689,
           13753230-13753287,13753736-13754941
          Length = 1036

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 159 THARSYGLLISVCLQAYVSNVTSPEKMCKCSIMKNL 266
           T  ++YG + S+    +V   T PE+M K  +M NL
Sbjct: 31  TPFKTYGKITSLQWDEFVKFKTLPEEMAKSKLMSNL 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,769,827
Number of Sequences: 37544
Number of extensions: 348933
Number of successful extensions: 727
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)