Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30480
         (737 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27880| Best HMM Match : Activin_recp (HMM E-Value=5.1)              30   2.3  
SB_1652| Best HMM Match : Keratin_B2 (HMM E-Value=0.031)               29   3.0  
SB_38249| Best HMM Match : HA2 (HMM E-Value=1.6e-26)                   28   6.9  
SB_22524| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  

>SB_27880| Best HMM Match : Activin_recp (HMM E-Value=5.1)
          Length = 415

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 108 SFVH*KAYFEKVPTRTCTH-ARSYGLLISV 194
           +F+H   Y + VPTR C H  RSY  L +V
Sbjct: 363 TFLHLSVYTKNVPTRVCIHQKRSYTCLYTV 392



 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +3

Query: 108 SFVH*KAYFEKVPTRTCTHAR-SYGLLISVCLQAYVSNVTS--PEKMC 242
           +F+H   Y + +PTR C H + SY  L +     +VS  T   P ++C
Sbjct: 239 TFLHVSVYTKNIPTRVCIHRKHSYTCLYTPRTSLHVSVYTKNIPIRVC 286



 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
 Frame = +3

Query: 114 VH*KAYFEKVPTRTCTH-ARSYGLLIS--VCLQAYVSNVTSPEKMC 242
           +H   Y + +PTR C H    Y  L +   CLQ  V     P ++C
Sbjct: 24  LHVSVYTKNIPTRVCIHQEHPYTCLYTPKTCLQVSVYTKNIPTRVC 69



 Score = 27.9 bits (59), Expect = 9.1
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
 Frame = +3

Query: 36  TAVCWLAQWSHAHSGARTLHSLVYSFVH*KAYFEKVPTRTCTHAR-SYGLLIS----VCL 200
           T VC      H+++G  T  +    F+H   Y + +PTR C H +  Y  L +    + L
Sbjct: 314 TRVC--IHQKHSYTGLYTPRT----FLHVSVYTKNIPTRVCIHQKHPYTCLYTPRTFLHL 367

Query: 201 QAYVSNVTSPEKMC 242
             Y  NV  P ++C
Sbjct: 368 SVYTKNV--PTRVC 379


>SB_1652| Best HMM Match : Keratin_B2 (HMM E-Value=0.031)
          Length = 563

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +2

Query: 611 LIYVMLFYIHLCCIIYYCLFFCDII 685
           L  V+L+ + LCC++ +C+  C ++
Sbjct: 440 LCRVVLYCVKLCCVVLHCVVLCCVV 464


>SB_38249| Best HMM Match : HA2 (HMM E-Value=1.6e-26)
          Length = 355

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = +1

Query: 10  SRFVCVWPEQLFVGSLSGRTHTAARGHFTHLCTRSYIKRLTSRRSP 147
           + +  VW  Q  +    GR      G   HLC+R+   RL    +P
Sbjct: 140 TNYATVWASQTNMEQRRGRAGRVRPGFAFHLCSRARADRLAEHATP 185


>SB_22524| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 353

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +2

Query: 596 SFS*YLIYVMLFYIHLCCIIYYCL 667
           SFS Y+I+ ++F++H+   IYY L
Sbjct: 238 SFS-YIIFFLIFFLHISINIYYTL 260


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,182,361
Number of Sequences: 59808
Number of extensions: 471286
Number of successful extensions: 1113
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)