Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30480
         (737 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              25   0.98 
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    25   0.98 
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    22   5.2  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   5.2  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   9.1  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   9.1  

>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 24.6 bits (51), Expect = 0.98
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +2

Query: 359 CKMIYLQYLSLVLHKYFKINSFRTFEQNNGFME 457
           C+  YL+   + LH  +  +  +   + NG ME
Sbjct: 94  CRESYLKERHITLHHCYDADGIKLMNEENGVME 126


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 24.6 bits (51), Expect = 0.98
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +2

Query: 359 CKMIYLQYLSLVLHKYFKINSFRTFEQNNGFME 457
           C+  YL+   + LH  +  +  +   + NG ME
Sbjct: 94  CRESYLKERHITLHHCYDADGIKLMNEENGVME 126


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +1

Query: 64  RTHTAARGHFTHLCTRSYIKRLTSRRSPRAH 156
           R HT  + +    C R +++    RR  R H
Sbjct: 30  RLHTGEKPYHCSHCDRQFVQVANLRRHLRVH 60


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +2

Query: 311 QNFALRFLITAISIGFCKMIYLQYLSLVL 397
           +NF +      + +G CK IY+Q ++L +
Sbjct: 167 RNFPMDRQSCPLILGSCKCIYVQSINLCM 195


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = -1

Query: 80  AAVCVRP-LSEPTNSCSGHTQ 21
           AA  V P + EPTN+ SG  +
Sbjct: 416 AAALVAPGMEEPTNTASGSNE 436


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +1

Query: 64  RTHTAARGHFTHLCTRSYIK 123
           R HT  R H   +C++++I+
Sbjct: 168 RIHTGERPHKCTVCSKTFIQ 187


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,689
Number of Sequences: 438
Number of extensions: 4501
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)