Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30477
(778 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 35 0.011
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 30 0.43
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 28 1.3
SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces pomb... 27 2.3
SPBC1604.10 |srb7|med21|mediator complex subunit Srb7 |Schizosac... 27 3.0
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei... 27 3.0
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.2
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 26 5.2
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 26 5.2
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 26 6.9
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 6.9
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac... 26 6.9
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy... 25 9.2
SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce... 25 9.2
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 35.1 bits (77), Expect = 0.011
Identities = 23/84 (27%), Positives = 42/84 (50%)
Frame = +2
Query: 98 AQKQKISFLENNLEQLTKVHKQLVRDNADLRCEVPKLEKRLRATMERVKALETALKEAKD 277
A+ + IS+ E L ++ N DL+ E KL+ +++A +ER ++L+ AL+ K+
Sbjct: 299 AENKTISY-EEKLSIAQNSINEIQTQNRDLKLETEKLQDQIKALLERNQSLQEALETVKN 357
Query: 278 GAMRDRKRYQFEVDRIKEAVRAKN 349
R+ +KEA + N
Sbjct: 358 DEKNLREMNANYETEMKEARQKLN 381
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 29.9 bits (64), Expect = 0.43
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Frame = +2
Query: 122 LENNLEQLTKVHKQLVRDNADLRCEVPKLEKRLRATMERVKALET------ALKEAKDGA 283
LE +++Q++ +L + NA+ R ++ +LEK A ER++ L + LKE K+
Sbjct: 219 LEESIKQVSS-SIELEKINAEQRLQISELEKLKAAQEERIEKLSSNNRNVEILKEEKNDL 277
Query: 284 MRDRKRYQFEVDRIKEA 334
+ K Y+FE R K A
Sbjct: 278 --ESKLYRFEEYRDKVA 292
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 28.3 bits (60), Expect = 1.3
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +2
Query: 107 QKISFLENNLEQLTKVHKQLVRDNADLRCEVPKLEKRLRATMERVKALETALKEAK 274
QK+S + L TK+ N DLR V E +L+ +++K + + L+ K
Sbjct: 385 QKLSRVNEELVLKTKIATASSNANTDLRSRVDISESKLKKRDDKLKRVSSQLEHLK 440
>SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +3
Query: 492 LEMKVEAICSHVVENLMKLHRCTYEERRNSFLKYIHYNITIV 617
LEM + C + +++K H T +E+ SF+K I++ TI+
Sbjct: 197 LEMAEKEYCRRI--DILKCHYETIDEKDYSFVKMINFAETII 236
>SPBC1604.10 |srb7|med21|mediator complex subunit Srb7
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 138
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 101 QKQKISFLENNLEQLTKVHKQLVRDNADLRCEVPK 205
Q +KI L+N++E+ K L +N DL+ ++ K
Sbjct: 89 QLEKIKKLQNSIEEKQLERKSLESENEDLKLQLAK 123
>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 968
Score = 27.1 bits (57), Expect = 3.0
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = +2
Query: 107 QKISFLENNLEQLTKVHKQLVRDNADLRCEVPKLEKRLRATME---RVKALETALKEAKD 277
Q++ +L L + +HK+L DNA L ++ L ++ M+ +V+ L++
Sbjct: 135 QQLRYLRLQLSEKEDLHKKLSVDNAHLIKQLDLLSSNMKTLMKEKTKVQGQRDLLEQRLQ 194
Query: 278 GAMR 289
G M+
Sbjct: 195 GLMK 198
>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 471
Score = 26.2 bits (55), Expect = 5.2
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -1
Query: 217 SFLQLGHFASQVGIVTHELLVDFRQLLQVILQERDLLFL 101
S Q G+F S GI+ LL+ F L + L +RD++ L
Sbjct: 315 SSFQAGNFLSLAGIINVPLLLIFSYLTR-YLTDRDIILL 352
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +3
Query: 102 KNKRSRSWRITWSN*RKSTSSSCVTMPTCDAKCPSWRNDSE 224
K K+ + W + + + K TS+ C+T PS+ + +E
Sbjct: 269 KKKKEQKWTLKFES-DKGTSTQCITHQPLPGSTPSFASGTE 308
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 26.2 bits (55), Expect = 5.2
Identities = 18/76 (23%), Positives = 32/76 (42%)
Frame = +2
Query: 104 KQKISFLENNLEQLTKVHKQLVRDNADLRCEVPKLEKRLRATMERVKALETALKEAKDGA 283
++ IS + +E+LT QL D E +L+KRL+ E +
Sbjct: 591 EESISLFKEEVEKLTDEITQLSERYNDKCHEFDELQKRLQTLEEENNKAKEDSTSKTSNL 650
Query: 284 MRDRKRYQFEVDRIKE 331
+ K + EVD +++
Sbjct: 651 LEQLKMTEAEVDSLRK 666
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 25.8 bits (54), Expect = 6.9
Identities = 28/93 (30%), Positives = 48/93 (51%)
Frame = +2
Query: 104 KQKISFLENNLEQLTKVHKQLVRDNADLRCEVPKLEKRLRATMERVKALETALKEAKDGA 283
KQKIS+LE+ LE L +L+R++ L CE K L + +++ LK +
Sbjct: 876 KQKISYLESQLEGL----HELLRESQRL-CE--GRTKELLNSQQKL----YDLKHSYSSV 924
Query: 284 MRDRKRYQFEVDRIKEAVRAKNLARRGPQAQIA 382
M ++ + +V+ + E +AK R+ + QIA
Sbjct: 925 MTEKSKLSDQVNDLTE--QAKITQRKLSEVQIA 955
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 25.8 bits (54), Expect = 6.9
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +2
Query: 209 EKRLRATMERVKALETALKEAKDGAMRDRKRYQFEVDRIKEAVRAKN 349
E+RL+ KALE ++ ++ A + K + + +IKE R+ N
Sbjct: 368 EERLKRINANKKALEELNQKKRELAQQQLKEQELLMQKIKETDRSGN 414
>SPCC1827.02c |||cholinephosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 354
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +2
Query: 242 KALETALKEAKDGAMRDRKRYQFEVDRIKE 331
K E E +D R K+Y FE+D +E
Sbjct: 7 KMYEVEPSEKEDNVERQTKKYNFEIDEPEE 36
>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1010
Score = 25.4 bits (53), Expect = 9.2
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 694 SNLNVSMCTWI*YNYKKLLAIIGQVYMN 777
SNL V T +N K LL+II VY+N
Sbjct: 836 SNLKVEDPTKYHFNAKTLLSIIFDVYLN 863
>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 520
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 518 QSRRREFNETS*MYLRRTTKFILEIYP 598
+S+ FN+ + Y + TK +LE+YP
Sbjct: 338 KSKEDLFNQVNNYYPEKVTKALLELYP 364
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,447,332
Number of Sequences: 5004
Number of extensions: 39274
Number of successful extensions: 135
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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