Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30477
(778 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0249 - 10946993-10947073,10947307-10947432,10948497-109485... 33 0.25
05_05_0348 + 24271764-24271898,24273055-24273144,24273205-242733... 33 0.33
06_03_1311 - 29241884-29242054,29242802-29242879,29242968-292430... 32 0.44
11_06_0017 - 19288171-19288437,19288770-19288989,19291630-19291754 31 0.77
02_05_0548 + 29896648-29896701,29896818-29897021,29897451-298977... 31 0.77
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039... 30 1.8
03_01_0191 + 1531107-1531948,1532101-1532233,1532366-1532450,153... 29 3.1
04_01_0261 + 3516461-3516629,3517729-3517823,3518724-3518834,351... 29 4.1
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265... 29 4.1
02_02_0677 + 12859101-12859413,12862450-12862817 29 5.4
01_01_0473 - 3478660-3480338,3480507-3480609 29 5.4
03_05_0223 - 22087076-22087340,22087448-22087726,22087808-220879... 28 7.2
02_05_1224 + 35045268-35045270,35045735-35045863,35046037-350461... 28 9.5
>05_03_0249 -
10946993-10947073,10947307-10947432,10948497-10948552,
10949066-10949338,10951434-10951716
Length = 272
Score = 33.1 bits (72), Expect = 0.25
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = +2
Query: 212 KRLRATMERVKALETALKEAKDGAMRDRKRYQFEVDRIKEAVR 340
+ ++ ME V L+EAK G++ + ++YQ E+ R+ E V+
Sbjct: 115 RTMKKNMEAVTKQSRTLEEAKHGSVEEIQQYQKEISRLNEQVQ 157
>05_05_0348 +
24271764-24271898,24273055-24273144,24273205-24273303,
24273725-24273826,24273912-24274088,24274193-24274398,
24274491-24274575,24274641-24274798,24274873-24274948,
24275117-24275245,24275313-24275457,24275561-24275691,
24276183-24276335,24276447-24276636,24277006-24277139,
24277248-24277406,24277659-24277964,24278040-24278216,
24278446-24278529,24278592-24278822,24278913-24279002,
24279090-24279211,24279293-24279448,24279477-24279635,
24279705-24279765,24280004-24280138,24280384-24280471,
24280548-24280620,24280883-24280994,24281691-24281711
Length = 1327
Score = 32.7 bits (71), Expect = 0.33
Identities = 16/75 (21%), Positives = 39/75 (52%)
Frame = +2
Query: 104 KQKISFLENNLEQLTKVHKQLVRDNADLRCEVPKLEKRLRATMERVKALETALKEAKDGA 283
KQKI LE+ E+ T + ++ + +P+LE+ + E+ E L++ K+ +
Sbjct: 407 KQKIKKLEDKTEKDTSKIDESTKEVEESSSLIPQLEEEIPKLQEKFNEEEKVLEQIKENS 466
Query: 284 MRDRKRYQFEVDRIK 328
+ +R + ++ +++
Sbjct: 467 REETERLRSKLTQVR 481
Score = 31.1 bits (67), Expect = 1.0
Identities = 20/87 (22%), Positives = 45/87 (51%)
Frame = +2
Query: 125 ENNLEQLTKVHKQLVRDNADLRCEVPKLEKRLRATMERVKALETALKEAKDGAMRDRKRY 304
EN+ E+ ++ +L + ++L ++ + + +++ A + +KE DGA +
Sbjct: 464 ENSREETERLRSKLTQVRSELEPWENQIIEH-KGSLDVASAEKKLMKEKHDGARAELTAA 522
Query: 305 QFEVDRIKEAVRAKNLARRGPQAQIAK 385
Q +++ IKE ++AK+ Q +I K
Sbjct: 523 QNQMESIKEQIKAKDTYIMELQEKIEK 549
>06_03_1311 -
29241884-29242054,29242802-29242879,29242968-29243049,
29243141-29243212,29243316-29243437,29243541-29243596,
29244264-29244333,29244435-29244518,29244599-29244667,
29244855-29244928,29245014-29245125,29245220-29245510
Length = 426
Score = 32.3 bits (70), Expect = 0.44
Identities = 16/34 (47%), Positives = 17/34 (50%)
Frame = -3
Query: 212 SPAWALRIAGRHCHARAACGLSSVAPGYSPRTRS 111
SPA + GR CH AA G S P PR RS
Sbjct: 8 SPANVQMLQGRSCHGHAAFGGCSAVPRTGPRMRS 41
>11_06_0017 - 19288171-19288437,19288770-19288989,19291630-19291754
Length = 203
Score = 31.5 bits (68), Expect = 0.77
Identities = 19/48 (39%), Positives = 31/48 (64%)
Frame = +2
Query: 188 RCEVPKLEKRLRATMERVKALETALKEAKDGAMRDRKRYQFEVDRIKE 331
R E +LEK+L ER KA E +KEA + ++ +RYQ E++R+++
Sbjct: 119 RKEREELEKKLEE--ERKKAEEAQMKEAMEQQQKELERYQ-ELERLQK 163
>02_05_0548 +
29896648-29896701,29896818-29897021,29897451-29897708,
29897821-29898036,29898130-29898285,29898396-29898707,
29898795-29898882,29899055-29899203,29899390-29899722
Length = 589
Score = 31.5 bits (68), Expect = 0.77
Identities = 17/82 (20%), Positives = 46/82 (56%)
Frame = +2
Query: 104 KQKISFLENNLEQLTKVHKQLVRDNADLRCEVPKLEKRLRATMERVKALETALKEAKDGA 283
K++++ + LEQL K K+ +++ A+++ + ++ + T+E + AL + +
Sbjct: 95 KEQLTAIAPTLEQLGKKKKERIKELANIQSRIEQIRGEIAGTLE--MGQQVALPQINEDD 152
Query: 284 MRDRKRYQFEVDRIKEAVRAKN 349
+ RK +F++ +++E + K+
Sbjct: 153 LTVRKLREFQL-QLQELEKEKS 173
>02_05_0484 -
29401195-29401404,29401572-29401755,29401866-29403973,
29404320-29404403,29404507-29404777,29404864-29405117,
29405513-29405722,29406357-29406503
Length = 1155
Score = 30.3 bits (65), Expect = 1.8
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Frame = +2
Query: 95 LAQKQKISFLENNLEQLTKVHKQLVRDNADLRCEVPKLEKRLRATMERVKAL-ETALKEA 271
+A+K+KI +NNL+ + ++ + A L+ E+ + R + E + L + K
Sbjct: 450 VAEKEKILQEQNNLKLTEEERQEHIMLTAQLKKEIDEYRMRSNSLSEETEDLRKQRQKFE 509
Query: 272 KDGAMRDRKRYQFEVDRIKEAVRAKNLAR 358
++ D KR E + K KNL R
Sbjct: 510 EEWEQLDEKRTHLEEEAKKLNNEKKNLER 538
>03_01_0191 +
1531107-1531948,1532101-1532233,1532366-1532450,
1533282-1533502
Length = 426
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/56 (33%), Positives = 30/56 (53%)
Frame = +2
Query: 104 KQKISFLENNLEQLTKVHKQLVRDNADLRCEVPKLEKRLRATMERVKALETALKEA 271
+QK+ L++ L+ + RD+A L + +L+ RL A ME+ L AL EA
Sbjct: 304 EQKVQILQSEATNLSAQLTMMQRDSAGLATQNNELKFRLHA-MEQQAQLRDALNEA 358
>04_01_0261 +
3516461-3516629,3517729-3517823,3518724-3518834,
3519179-3519213,3519864-3519954,3520124-3520196,
3521127-3521257,3524325-3524720
Length = 366
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +2
Query: 119 FLENNLEQLTKVHKQLVRDNADLRCEVPKLEKRLRATMERVKALE 253
+L E LTK + D A L+ E +EK +R ER+K LE
Sbjct: 192 YLTKKYENLTKKRNE---DLAKLKKEKEDMEKEIRGLRERIKELE 233
>02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,
2657523-2657649,2657731-2657812,2658172-2658196
Length = 2621
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +2
Query: 122 LENNLEQLTKVHKQLVRDNADLRCEVPKLEKRLRATMERVKALETALKEAKD 277
L + +++ KQL + + R E+ LEK + + K LET + E KD
Sbjct: 2239 LASQVKEAESSAKQLSVELENARMEIHNLEKHSEMLLNQKKNLETQVSELKD 2290
>02_02_0677 + 12859101-12859413,12862450-12862817
Length = 226
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 218 LRATMERVKALETALKEAKDGAMRDRKRYQFEVDRIKEAVRAKNL 352
L+ +E V L+EAK G + K+YQ E+ + E ++ L
Sbjct: 127 LKKNVEAVTKHNKMLEEAKHGRSEETKKYQEEIGALNEDMKKLKL 171
>01_01_0473 - 3478660-3480338,3480507-3480609
Length = 593
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/56 (26%), Positives = 32/56 (57%)
Frame = +2
Query: 98 AQKQKISFLENNLEQLTKVHKQLVRDNADLRCEVPKLEKRLRATMERVKALETALK 265
A ++I+ LE+ L++ + + L N RC+ KLE++L+ + + +L+ L+
Sbjct: 188 ALNERIAELEDELQEAREKLEALEEKNT--RCQCEKLEEKLKDSHSEISSLQKELE 241
>03_05_0223 -
22087076-22087340,22087448-22087726,22087808-22087950,
22088029-22088133,22088272-22088465,22088561-22088753,
22088893-22089202,22089335-22089558,22089862-22089990,
22090019-22090078,22090426-22090617,22091463-22091522,
22091606-22091688,22092473-22092611,22092949-22093083,
22093187-22093462
Length = 928
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 236 RVKALETALKEAKDGAMRDRKRYQFEVDRIKEAVRAKNLARR 361
++K ++ LK K GAMR+ ++ + + +KE R K R
Sbjct: 856 QMKKMKKRLKSEKKGAMRELRKDNYFLSAVKEKERIKQEQER 897
>02_05_1224 + 35045268-35045270,35045735-35045863,35046037-35046180,
35046306-35046451,35046583-35046739,35046838-35046896,
35046978-35047137,35047716-35047865,35047969-35048105,
35048186-35048332,35048428-35048540,35048880-35048971,
35049637-35049738,35050108-35050145,35050255-35050381,
35050462-35050632,35050721-35050852,35050929-35051038,
35051118-35051178,35051386-35051427,35051756-35051933,
35052043-35052248,35052843-35052962,35053138-35053182,
35053310-35053408,35053846-35054058,35054254-35054393,
35054469-35054583,35054684-35054722,35054816-35054899,
35054969-35055139,35055891-35056100,35056193-35056378,
35056473-35056601,35056679-35056749,35056834-35056933,
35057016-35057072,35057778-35057834,35057940-35058020,
35058256-35058338,35058448-35058562
Length = 1572
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +2
Query: 203 KLEKRLRATMERVKALETALKEAKDGAMRDRKRYQFEVDRIKEAVRAKNLARRGP 367
+LEKR+RA +E K+ E A +A ++ + + E+ +KE AK A P
Sbjct: 950 QLEKRMRADLEEAKSQENAKLQATLQEVQQQYKETQEM-LVKEREAAKKAAEVAP 1003
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,136,711
Number of Sequences: 37544
Number of extensions: 276208
Number of successful extensions: 916
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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