BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30477
(778 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY214334-1|AAP69612.1| 519|Anopheles gambiae nicotinate phospho... 28 0.28
EF519384-1|ABP68493.1| 506|Anopheles gambiae LRIM1 protein. 25 2.6
EF519383-1|ABP68492.1| 506|Anopheles gambiae LRIM1 protein. 25 2.6
EF519382-1|ABP68491.1| 493|Anopheles gambiae LRIM1 protein. 25 2.6
EF519381-1|ABP68490.1| 506|Anopheles gambiae LRIM1 protein. 25 2.6
EF519380-1|ABP68489.1| 506|Anopheles gambiae LRIM1 protein. 25 2.6
EF519376-1|ABP68485.1| 506|Anopheles gambiae LRIM1 protein. 25 2.6
EF519374-1|ABP68483.1| 506|Anopheles gambiae LRIM1 protein. 25 2.6
EF519373-1|ABP68482.1| 506|Anopheles gambiae LRIM1 protein. 25 2.6
EF519372-1|ABP68481.1| 506|Anopheles gambiae LRIM1 protein. 25 2.6
EF519371-1|ABP68480.1| 506|Anopheles gambiae LRIM1 protein. 25 2.6
EF519369-1|ABP68478.1| 506|Anopheles gambiae LRIM1 protein. 25 2.6
EF519367-1|ABP68476.1| 506|Anopheles gambiae LRIM1 protein. 25 2.6
EF519366-1|ABP68475.1| 506|Anopheles gambiae LRIM1 protein. 25 2.6
EF519365-1|ABP68474.1| 486|Anopheles gambiae LRIM1 protein. 25 2.6
EF519364-1|ABP68473.1| 496|Anopheles gambiae LRIM1 protein. 25 2.6
EF519363-1|ABP68472.1| 503|Anopheles gambiae LRIM1 protein. 25 2.6
EF519361-1|ABP68470.1| 497|Anopheles gambiae LRIM1 protein. 25 2.6
EF519359-1|ABP68468.1| 506|Anopheles gambiae LRIM1 protein. 25 2.6
EF519358-1|ABP68467.1| 497|Anopheles gambiae LRIM1 protein. 25 2.6
EF519357-1|ABP68466.1| 506|Anopheles gambiae LRIM1 protein. 25 2.6
AF395080-1|AAK97462.1| 537|Anopheles gambiae zinc finger transc... 25 2.6
AB090815-1|BAC57905.1| 492|Anopheles gambiae gag-like protein p... 25 3.5
EF519375-1|ABP68484.1| 493|Anopheles gambiae LRIM1 protein. 24 4.6
EF519368-1|ABP68477.1| 506|Anopheles gambiae LRIM1 protein. 24 4.6
AJ439060-17|CAD27768.1| 568|Anopheles gambiae putative chitin b... 24 4.6
EF519362-1|ABP68471.1| 506|Anopheles gambiae LRIM1 protein. 23 8.0
EF519360-1|ABP68469.1| 499|Anopheles gambiae LRIM1 protein. 23 8.0
EF519356-1|ABP68465.1| 500|Anopheles gambiae LRIM1 protein. 23 8.0
EF519355-1|ABP68464.1| 506|Anopheles gambiae LRIM1 protein. 23 8.0
EF519354-1|ABP68463.1| 506|Anopheles gambiae LRIM1 protein. 23 8.0
EF519351-1|ABP68460.1| 486|Anopheles gambiae LRIM1 protein. 23 8.0
EF519349-1|ABP68458.1| 486|Anopheles gambiae LRIM1 protein. 23 8.0
AM085517-1|CAJ30215.1| 339|Anopheles gambiae putative angiotens... 23 8.0
>AY214334-1|AAP69612.1| 519|Anopheles gambiae nicotinate
phosphoribosyltransferase-like protein protein.
Length = 519
Score = 28.3 bits (60), Expect = 0.28
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -1
Query: 280 TVFCFLERCLECLDTFHGGSESFLQLGHFASQ 185
T+F LE CL+ LD+FH L H Q
Sbjct: 31 TIFAGLEECLKFLDSFHYSETDIEYLKHALPQ 62
>EF519384-1|ABP68493.1| 506|Anopheles gambiae LRIM1 protein.
Length = 506
Score = 25.0 bits (52), Expect = 2.6
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 218 LRATMERVKALETALKEAKDGAMRDRKRYQF-EVDRIKEAVRAKNL 352
LRA ++R + + + A++ A+RD YQ E +E R K L
Sbjct: 434 LRAIVKRYEEMYVEQQSAQNNAIRDWDMYQHKETQLAEENARLKKL 479
>EF519383-1|ABP68492.1| 506|Anopheles gambiae LRIM1 protein.
Length = 506
Score = 25.0 bits (52), Expect = 2.6
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 218 LRATMERVKALETALKEAKDGAMRDRKRYQF-EVDRIKEAVRAKNL 352
LRA ++R + + + A++ A+RD YQ E +E R K L
Sbjct: 434 LRAIVKRYEEMYVEQQSAQNNAIRDWDMYQHKETQLAEENARLKKL 479
>EF519382-1|ABP68491.1| 493|Anopheles gambiae LRIM1 protein.
Length = 493
Score = 25.0 bits (52), Expect = 2.6
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 218 LRATMERVKALETALKEAKDGAMRDRKRYQF-EVDRIKEAVRAKNL 352
LRA ++R + + + A++ A+RD YQ E +E R K L
Sbjct: 434 LRAIVKRYEEMYVEQQSAQNNAIRDWDMYQHKETQLAEENARLKKL 479
>EF519381-1|ABP68490.1| 506|Anopheles gambiae LRIM1 protein.
Length = 506
Score = 25.0 bits (52), Expect = 2.6
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 218 LRATMERVKALETALKEAKDGAMRDRKRYQF-EVDRIKEAVRAKNL 352
LRA ++R + + + A++ A+RD YQ E +E R K L
Sbjct: 434 LRAIVKRYEEMYVEQQSAQNNAIRDWDMYQHKETQLAEENARLKKL 479
>EF519380-1|ABP68489.1| 506|Anopheles gambiae LRIM1 protein.
Length = 506
Score = 25.0 bits (52), Expect = 2.6
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 218 LRATMERVKALETALKEAKDGAMRDRKRYQF-EVDRIKEAVRAKNL 352
LRA ++R + + + A++ A+RD YQ E +E R K L
Sbjct: 434 LRAIVKRYEEMYVEQQSAQNNAIRDWDMYQHKETQLAEENARLKKL 479
>EF519376-1|ABP68485.1| 506|Anopheles gambiae LRIM1 protein.
Length = 506
Score = 25.0 bits (52), Expect = 2.6
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 218 LRATMERVKALETALKEAKDGAMRDRKRYQF-EVDRIKEAVRAKNL 352
LRA ++R + + + A++ A+RD YQ E +E R K L
Sbjct: 434 LRAIVKRYEEMYVEQQSAQNNAIRDWDMYQHKETQLAEENARLKKL 479
>EF519374-1|ABP68483.1| 506|Anopheles gambiae LRIM1 protein.
Length = 506
Score = 25.0 bits (52), Expect = 2.6
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 218 LRATMERVKALETALKEAKDGAMRDRKRYQF-EVDRIKEAVRAKNL 352
LRA ++R + + + A++ A+RD YQ E +E R K L
Sbjct: 434 LRAIVKRYEEMYVEQQSAQNNAIRDWDMYQHKETQLAEENARLKKL 479
>EF519373-1|ABP68482.1| 506|Anopheles gambiae LRIM1 protein.
Length = 506
Score = 25.0 bits (52), Expect = 2.6
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 218 LRATMERVKALETALKEAKDGAMRDRKRYQF-EVDRIKEAVRAKNL 352
LRA ++R + + + A++ A+RD YQ E +E R K L
Sbjct: 434 LRAIVKRYEEMYVEQQSAQNNAIRDWDMYQHKETQLAEENARLKKL 479
>EF519372-1|ABP68481.1| 506|Anopheles gambiae LRIM1 protein.
Length = 506
Score = 25.0 bits (52), Expect = 2.6
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 218 LRATMERVKALETALKEAKDGAMRDRKRYQF-EVDRIKEAVRAKNL 352
LRA ++R + + + A++ A+RD YQ E +E R K L
Sbjct: 434 LRAIVKRYEEMYVEQQSAQNNAIRDWDMYQHKETQLAEENARLKKL 479
>EF519371-1|ABP68480.1| 506|Anopheles gambiae LRIM1 protein.
Length = 506
Score = 25.0 bits (52), Expect = 2.6
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 218 LRATMERVKALETALKEAKDGAMRDRKRYQF-EVDRIKEAVRAKNL 352
LRA ++R + + + A++ A+RD YQ E +E R K L
Sbjct: 434 LRAIVKRYEEMYVEQQSAQNNAIRDWDMYQHKETQLAEENARLKKL 479
>EF519369-1|ABP68478.1| 506|Anopheles gambiae LRIM1 protein.
Length = 506
Score = 25.0 bits (52), Expect = 2.6
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 218 LRATMERVKALETALKEAKDGAMRDRKRYQF-EVDRIKEAVRAKNL 352
LRA ++R + + + A++ A+RD YQ E +E R K L
Sbjct: 434 LRAIVKRYEEMYVEQQSAQNNAIRDWDMYQHKETQLAEENARLKKL 479
>EF519367-1|ABP68476.1| 506|Anopheles gambiae LRIM1 protein.
Length = 506
Score = 25.0 bits (52), Expect = 2.6
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 218 LRATMERVKALETALKEAKDGAMRDRKRYQF-EVDRIKEAVRAKNL 352
LRA ++R + + + A++ A+RD YQ E +E R K L
Sbjct: 434 LRAIVKRYEEMYVEQQSAQNNAIRDWDMYQHKETQLAEENARLKKL 479
>EF519366-1|ABP68475.1| 506|Anopheles gambiae LRIM1 protein.
Length = 506
Score = 25.0 bits (52), Expect = 2.6
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 218 LRATMERVKALETALKEAKDGAMRDRKRYQF-EVDRIKEAVRAKNL 352
LRA ++R + + + A++ A+RD YQ E +E R K L
Sbjct: 434 LRAIVKRYEEMYVEQQSAQNNAIRDWDMYQHKETQLAEENARLKKL 479
>EF519365-1|ABP68474.1| 486|Anopheles gambiae LRIM1 protein.
Length = 486
Score = 25.0 bits (52), Expect = 2.6
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 218 LRATMERVKALETALKEAKDGAMRDRKRYQF-EVDRIKEAVRAKNL 352
LRA ++R + + + A++ A+RD YQ E +E R K L
Sbjct: 434 LRAIVKRYEEMYVEQQSAQNNAIRDWDMYQHKETQLAEENARLKKL 479
>EF519364-1|ABP68473.1| 496|Anopheles gambiae LRIM1 protein.
Length = 496
Score = 25.0 bits (52), Expect = 2.6
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 218 LRATMERVKALETALKEAKDGAMRDRKRYQF-EVDRIKEAVRAKNL 352
LRA ++R + + + A++ A+RD YQ E +E R K L
Sbjct: 434 LRAIVKRYEEMYVEQQSAQNNAIRDWDMYQHKETQLAEENARLKKL 479
>EF519363-1|ABP68472.1| 503|Anopheles gambiae LRIM1 protein.
Length = 503
Score = 25.0 bits (52), Expect = 2.6
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 218 LRATMERVKALETALKEAKDGAMRDRKRYQF-EVDRIKEAVRAKNL 352
LRA ++R + + + A++ A+RD YQ E +E R K L
Sbjct: 434 LRAIVKRYEEMYVEQQSAQNNAIRDWDMYQHKETQLAEENARLKKL 479
>EF519361-1|ABP68470.1| 497|Anopheles gambiae LRIM1 protein.
Length = 497
Score = 25.0 bits (52), Expect = 2.6
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 218 LRATMERVKALETALKEAKDGAMRDRKRYQF-EVDRIKEAVRAKNL 352
LRA ++R + + + A++ A+RD YQ E +E R K L
Sbjct: 434 LRAIVKRYEEMYVEQQSAQNNAIRDWDMYQHKETQLAEENARLKKL 479
>EF519359-1|ABP68468.1| 506|Anopheles gambiae LRIM1 protein.
Length = 506
Score = 25.0 bits (52), Expect = 2.6
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 218 LRATMERVKALETALKEAKDGAMRDRKRYQF-EVDRIKEAVRAKNL 352
LRA ++R + + + A++ A+RD YQ E +E R K L
Sbjct: 434 LRAIVKRYEEMYVEQQSAQNNAIRDWDMYQHKETQLAEENARLKKL 479
>EF519358-1|ABP68467.1| 497|Anopheles gambiae LRIM1 protein.
Length = 497
Score = 25.0 bits (52), Expect = 2.6
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 218 LRATMERVKALETALKEAKDGAMRDRKRYQF-EVDRIKEAVRAKNL 352
LRA ++R + + + A++ A+RD YQ E +E R K L
Sbjct: 434 LRAIVKRYEEMYVEQQSAQNNAIRDWDMYQHKETQLAEENARLKKL 479
>EF519357-1|ABP68466.1| 506|Anopheles gambiae LRIM1 protein.
Length = 506
Score = 25.0 bits (52), Expect = 2.6
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 218 LRATMERVKALETALKEAKDGAMRDRKRYQF-EVDRIKEAVRAKNL 352
LRA ++R + + + A++ A+RD YQ E +E R K L
Sbjct: 434 LRAIVKRYEEMYVEQQSAQNNAIRDWDMYQHKETQLAEENARLKKL 479
>AF395080-1|AAK97462.1| 537|Anopheles gambiae zinc finger
transcription factor pannier protein.
Length = 537
Score = 25.0 bits (52), Expect = 2.6
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +1
Query: 208 GETTPSHHGTCQGTRDSAQGSK 273
G TPS+HG T+++A G++
Sbjct: 402 GSNTPSNHGALGNTQNNAGGNQ 423
>AB090815-1|BAC57905.1| 492|Anopheles gambiae gag-like protein
protein.
Length = 492
Score = 24.6 bits (51), Expect = 3.5
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
Frame = +2
Query: 152 VHKQLVRDNADLRCEVPKLEKRLRATMERVKALETALKEAKDGAMR-------DRKRYQF 310
VH + + + + +E+ L T R + E +LKEA +G + R R
Sbjct: 118 VHHPIKKMAVSILSALACVERELMTTRLRAERTEKSLKEALEGCSQTETPVNGKRGRNLR 177
Query: 311 EVDRIKEAVRAKNLARRG 364
+ +A RAKN A G
Sbjct: 178 STEEADDAKRAKNDAPSG 195
>EF519375-1|ABP68484.1| 493|Anopheles gambiae LRIM1 protein.
Length = 493
Score = 24.2 bits (50), Expect = 4.6
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 218 LRATMERVKALETALKEAKDGAMRDRKRY-QFEVDRIKEAVRAKNL 352
LRA ++R + + + A++ A+RD Y Q E +E R K L
Sbjct: 434 LRAIVKRYEEMYVEQQSAQNNAIRDWDMYQQKETQLAEENARLKKL 479
>EF519368-1|ABP68477.1| 506|Anopheles gambiae LRIM1 protein.
Length = 506
Score = 24.2 bits (50), Expect = 4.6
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 218 LRATMERVKALETALKEAKDGAMRDRKRY-QFEVDRIKEAVRAKNL 352
LRA ++R + + + A++ A+RD Y Q E +E R K L
Sbjct: 434 LRAIVKRYEEMYVEQQSAQNNAIRDWDMYQQKETQLAEENARLKKL 479
>AJ439060-17|CAD27768.1| 568|Anopheles gambiae putative chitin
binding protein protein.
Length = 568
Score = 24.2 bits (50), Expect = 4.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 314 VDRIKEAVRAKNLARRGPQA 373
V+ IKEA+R + RGP+A
Sbjct: 294 VEVIKEAIRVRQQELRGPEA 313
>EF519362-1|ABP68471.1| 506|Anopheles gambiae LRIM1 protein.
Length = 506
Score = 23.4 bits (48), Expect = 8.0
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 218 LRATMERVKALETALKEAKDGAMRDRKRYQF-EVDRIKEAVRAKNL 352
LRA ++R + + + ++ A+RD YQ E +E R K L
Sbjct: 434 LRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKL 479
>EF519360-1|ABP68469.1| 499|Anopheles gambiae LRIM1 protein.
Length = 499
Score = 23.4 bits (48), Expect = 8.0
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 218 LRATMERVKALETALKEAKDGAMRDRKRYQF-EVDRIKEAVRAKNL 352
LRA ++R + + + ++ A+RD YQ E +E R K L
Sbjct: 434 LRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKL 479
>EF519356-1|ABP68465.1| 500|Anopheles gambiae LRIM1 protein.
Length = 500
Score = 23.4 bits (48), Expect = 8.0
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 218 LRATMERVKALETALKEAKDGAMRDRKRYQF-EVDRIKEAVRAKNL 352
LRA ++R + + + ++ A+RD YQ E +E R K L
Sbjct: 434 LRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKL 479
>EF519355-1|ABP68464.1| 506|Anopheles gambiae LRIM1 protein.
Length = 506
Score = 23.4 bits (48), Expect = 8.0
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 218 LRATMERVKALETALKEAKDGAMRDRKRYQF-EVDRIKEAVRAKNL 352
LRA ++R + + + ++ A+RD YQ E +E R K L
Sbjct: 434 LRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKL 479
>EF519354-1|ABP68463.1| 506|Anopheles gambiae LRIM1 protein.
Length = 506
Score = 23.4 bits (48), Expect = 8.0
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 218 LRATMERVKALETALKEAKDGAMRDRKRYQF-EVDRIKEAVRAKNL 352
LRA ++R + + + ++ A+RD YQ E +E R K L
Sbjct: 434 LRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKL 479
>EF519351-1|ABP68460.1| 486|Anopheles gambiae LRIM1 protein.
Length = 486
Score = 23.4 bits (48), Expect = 8.0
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 218 LRATMERVKALETALKEAKDGAMRDRKRYQF-EVDRIKEAVRAKNL 352
LRA ++R + + + ++ A+RD YQ E +E R K L
Sbjct: 434 LRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKL 479
>EF519349-1|ABP68458.1| 486|Anopheles gambiae LRIM1 protein.
Length = 486
Score = 23.4 bits (48), Expect = 8.0
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 218 LRATMERVKALETALKEAKDGAMRDRKRYQF-EVDRIKEAVRAKNL 352
LRA ++R + + + ++ A+RD YQ E +E R K L
Sbjct: 434 LRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKL 479
>AM085517-1|CAJ30215.1| 339|Anopheles gambiae putative angiotensin
converting enzymeprecursor protein.
Length = 339
Score = 23.4 bits (48), Expect = 8.0
Identities = 13/38 (34%), Positives = 14/38 (36%)
Frame = -3
Query: 179 HCHARAACGLSSVAPGYSPRTRSFVFVQGNRLPPRRPL 66
HC A L +AP R F G P R PL
Sbjct: 20 HCEADPQLNLPPLAPPGLEGRRPVTFPNGEASPTRVPL 57
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 633,912
Number of Sequences: 2352
Number of extensions: 10539
Number of successful extensions: 71
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 81081585
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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