Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30477
         (778 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g48600.1 68418.m06011 structural maintenance of chromosomes (...    33   0.28 
At3g05130.1 68416.m00557 expressed protein ; expression supporte...    32   0.37 
At3g12550.1 68416.m01562 XH/XS domain-containing protein / XS zi...    32   0.49 
At1g22260.1 68414.m02782 expressed protein                             31   0.64 
At3g55060.1 68416.m06115 expressed protein contains weak similar...    30   1.5  
At2g27050.1 68415.m03250 ethylene-insensitive3-like1 (EIL1) iden...    30   1.5  
At1g22275.1 68414.m02784 expressed protein                             30   1.5  
At5g61865.1 68418.m07761 expressed protein                             29   2.6  
At5g61550.1 68418.m07724 protein kinase family protein contains ...    29   2.6  
At4g01170.1 68417.m00155 hypothetical protein                          29   3.4  
At1g77130.1 68414.m08985 glycogenin glucosyltransferase (glycoge...    29   4.5  
At4g13540.1 68417.m02111 expressed protein                             28   6.0  
At1g28420.1 68414.m03494 homeobox transcription factor, putative...    28   6.0  
At4g16900.1 68417.m02551 disease resistance protein (TIR-NBS-LRR...    28   7.9  
At2g32580.1 68415.m03978 expressed protein                             28   7.9  

>At5g48600.1 68418.m06011 structural maintenance of chromosomes
           (SMC) family protein similar to SP|P50532 Chromosome
           assembly protein XCAP-C {Xenopus laevis}; contains Pfam
           profiles PF02483: SMC family C-terminal domain, PF02463:
           RecF/RecN/SMC N terminal domain
          Length = 1241

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 20/75 (26%), Positives = 40/75 (53%)
 Frame = +2

Query: 104 KQKISFLENNLEQLTKVHKQLVRDNADLRCEVPKLEKRLRATMERVKALETALKEAKDGA 283
           KQKI  LE+ LE+ +     + +++ D    +PKL++ +    + +   E  L+E K  A
Sbjct: 350 KQKIKKLEDKLEKDSSKIGDMTKESEDSSNLIPKLQENIPKLQKVLLDEEKKLEEIKAIA 409

Query: 284 MRDRKRYQFEVDRIK 328
             + + Y+ E+ +I+
Sbjct: 410 KVETEGYRSELTKIR 424


>At3g05130.1 68416.m00557 expressed protein ; expression supported
           by MPSS
          Length = 634

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 26/89 (29%), Positives = 44/89 (49%)
 Frame = +2

Query: 95  LAQKQKISFLENNLEQLTKVHKQLVRDNADLRCEVPKLEKRLRATMERVKALETALKEAK 274
           + QK  I  LE  L++L +  + L ++   LR  V  LEK L  +ME+    E+ +    
Sbjct: 274 IEQKGVIEELERKLDKLNETVRSLTKEEKVLRDLVIGLEKNLDESMEK----ESGMMVEI 329

Query: 275 DGAMRDRKRYQFEVDRIKEAVRAKNLARR 361
           D   ++R   + EV+R+   +  KNL  +
Sbjct: 330 DALGKERTIKESEVERL---IGEKNLIEK 355


>At3g12550.1 68416.m01562 XH/XS domain-containing protein / XS zinc
           finger domain-containing protein contains Pfam domains
           PF03469: XH domain, PF03468: XS domain and PF03470: XS
           zinc finger domain
          Length = 635

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 24/98 (24%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
 Frame = +2

Query: 107 QKISFL-ENNLEQLTKVHKQLVRDNADLRCEVPKLEKRLRATMERVKALETALKEAKDGA 283
           Q+++F+ EN   +L K+  +  +D+  L+ E  + EK LRA  E +   +    +  +  
Sbjct: 262 QRLNFMVENKQYRLKKLQIKYSQDSVKLKYETEEKEKILRAYSEDLTGRQQKSTDHFNRI 321

Query: 284 MRDRKRYQFEVD-RIKE-AVRAKNLARRGPQAQIAKPI 391
             D ++ + +++ +IKE  +R   LA+R  + +  + I
Sbjct: 322 FADHEKQKVQLESQIKELEIRKLELAKREAENETQRKI 359


>At1g22260.1 68414.m02782 expressed protein
          Length = 857

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
 Frame = +2

Query: 101 QKQKISFLENNLEQLTKVHKQLVRDNADLRCEVPKLEKRLRATMERVKALETALKEA--K 274
           +K   S    +   L    ++LV+D A +R ++     +L+ +ME V ALE  L+ A  +
Sbjct: 30  RKPPDSVSSGSFSNLKLTAEKLVKDQAAMRTDLELANCKLKKSMEHVYALEEKLQNAFNE 89

Query: 275 DGAMRDRKR 301
           +  +R RK+
Sbjct: 90  NAKLRVRKK 98


>At3g55060.1 68416.m06115 expressed protein contains weak similarity
           to intracellular protein transport protein USO1
           (Swiss-Prot:P25386) [Saccharomyces cerevisiae];
           expression supported by MPSS
          Length = 896

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = +2

Query: 104 KQKISFLENNLEQLTKVHKQLVRDNADLRCEVPKLEKRLRATMERVKALETALKEAKDGA 283
           ++K+   E  +EQL       VR N  LRCEV      L  T   +K L+  + + ++  
Sbjct: 745 REKLYSKEKEIEQLQAELAAAVRGNEILRCEVQSSLDNLSVTTHELKDLKHQMLKKEESI 804

Query: 284 MR 289
            R
Sbjct: 805 RR 806


>At2g27050.1 68415.m03250 ethylene-insensitive3-like1 (EIL1)
           identical to ethylene-insensitive3-like1 GI:2224927 from
           [Arabidopsis thaliana]
          Length = 584

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = +2

Query: 173 DNADLRCEVPKLEKRLRATMERVKALETALKEAKDGAMRDRKRYQFEVDRIKEAVRAKN 349
           D  D   +V +LEKR+     R+K L+    + K+G    ++R   E  R K+  RA++
Sbjct: 40  DYTDDEMDVDELEKRMWRDKMRLKRLKEQQSKCKEGVDGSKQRQSQEQARRKKMSRAQD 98


>At1g22275.1 68414.m02784 expressed protein
          Length = 856

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/77 (27%), Positives = 39/77 (50%)
 Frame = +2

Query: 116 SFLENNLEQLTKVHKQLVRDNADLRCEVPKLEKRLRATMERVKALETALKEAKDGAMRDR 295
           S    +   L    ++LV+D A +R ++     +L+ +ME V ALE  L+ A +   + R
Sbjct: 35  SVSSGSFSNLKLTAEKLVKDQAAMRTDLELANCKLKKSMEHVYALEEKLQSAFNENAKLR 94

Query: 296 KRYQFEVDRIKEAVRAK 346
            R Q E +++   + +K
Sbjct: 95  VR-QKEDEKLWRGLESK 110


>At5g61865.1 68418.m07761 expressed protein
          Length = 417

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +2

Query: 140 QLTKVHKQLVRDNADLRCEVPKLEKRLRATME-RVKALETALKEAKDGAMR 289
           QL  V  ++ R N+D R E+    +R+R   E ++ AL + LK+A+D   R
Sbjct: 258 QLMNVVNEMERSNSDTRRELQDARERIRLAEETKINAL-SKLKKAEDQVQR 307


>At5g61550.1 68418.m07724 protein kinase family protein contains
           Pfam profile: PF00069 Eukaryotic protein kinase domain;
           protein kinase 1, PnPK1, Populus nigra, EMBL:AB041503
          Length = 845

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/98 (20%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
 Frame = +2

Query: 110 KISFLENNLEQLTKVHKQLVRDNADLRCEVPKLEKRLRATMERVKALETALKEAKDGAMR 289
           +I  L   L+ + +++     +      ++ +L +R     E++  L+   + AKD A +
Sbjct: 362 EIEKLRAELKHVQEMYAMAQTETVGASKKLTELNQRRFEESEKLVELKEKEEVAKDTASK 421

Query: 290 DRKRYQ---FEVDRIKEAVRAKNLARRGPQAQIAKPIR 394
           +++RY+    E +++KE +  + L RR  + +  +  R
Sbjct: 422 EKQRYEEAMKEAEKVKELMMKEALHRREAEFKAERDAR 459


>At4g01170.1 68417.m00155 hypothetical protein 
          Length = 444

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
 Frame = +2

Query: 110 KISFLENNLEQLTKVHKQLVRDNADLRCEVPKLE---KRLRATMERVKALETALKEAKDG 280
           KIS LEN      +VH+Q  R    L+ E  K++   +R     ER K     L  AK  
Sbjct: 68  KISKLENENPMKNRVHQQGQRKTVGLKAERDKIQDIIQRDNRVAERRKRRIAMLDAAK-- 125

Query: 281 AMRDRKRYQFEVDRIKEAVR 340
           A RD    + + + I++ VR
Sbjct: 126 ASRDVPLLETQQEDIQQRVR 145


>At1g77130.1 68414.m08985 glycogenin glucosyltransferase
          (glycogenin)-related contains similarity to
          glycogenin-1 from Mus musculus [SP|Q9R062], Rattus
          norvegicus [SP|O08730], Homo sapiens [SP|P46976]
          Length = 618

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = -1

Query: 82 LLGALFRIVRFLYPRLQV 29
          +LGALF I RF YP LQ+
Sbjct: 46 MLGALFTIYRFRYPPLQI 63


>At4g13540.1 68417.m02111 expressed protein
          Length = 210

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
 Frame = +2

Query: 170 RDNADLRCEVPKLEKRLRATMERVKALET---ALKEAKDGAMRDRKRYQFEVDRIKEAVR 340
           R+++  R +V   E+R R T   +   E    ALK A+    ++RKR + EV R+++ + 
Sbjct: 10  RNSSKRRIKVKANEQRRRETRRELDEKERVILALKMAETEWRKERKRLREEVKRLRQKME 69

Query: 341 AK 346
            K
Sbjct: 70  EK 71


>At1g28420.1 68414.m03494 homeobox transcription factor, putative
           similar to homeobox transcription factor Hox7 GI:19486
           [Lycopersicon peruvianum]
          Length = 1703

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 23/88 (26%), Positives = 44/88 (50%)
 Frame = +2

Query: 122 LENNLEQLTKVHKQLVRDNADLRCEVPKLEKRLRATMERVKALETALKEAKDGAMRDRKR 301
           +E N  +  K  ++L+R+      E  +L++  R  +ER    E  L+   + A  ++K+
Sbjct: 401 MERNERERRKEEERLMRERIK---EEERLQREQRREVER---REKFLQRENERA--EKKK 452

Query: 302 YQFEVDRIKEAVRAKNLARRGPQAQIAK 385
            + E+ R K+A+R K    +    +IAK
Sbjct: 453 QKDEIRREKDAIRRKLAIEKATARRIAK 480


>At4g16900.1 68417.m02551 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1072

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +2

Query: 122 LENNLEQLTKVHKQLVRDNADLRCEVPKLEKRLRATMERVKALETAL 262
           LE+N+     V K L+R   D   E+  L ++L   ++R K+ ET L
Sbjct: 442 LEDNVGVTMLVEKSLIRITPDGDIEMHNLLEKLGIEIDRAKSKETVL 488


>At2g32580.1 68415.m03978 expressed protein
          Length = 183

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 21/70 (30%), Positives = 37/70 (52%)
 Frame = +2

Query: 149 KVHKQLVRDNADLRCEVPKLEKRLRATMERVKALETALKEAKDGAMRDRKRYQFEVDRIK 328
           +V++   ++ A+L  E  +L++R  A+ME+ K ++T L EAK    +    YQ E D+  
Sbjct: 76  EVNEDTEKNYAELLTE--ELKQREAASMEKHKRVDTGLLEAK----KITSSYQKEADKCN 129

Query: 329 EAVRAKNLAR 358
             +     AR
Sbjct: 130 SGMETCEEAR 139


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,884,403
Number of Sequences: 28952
Number of extensions: 212515
Number of successful extensions: 753
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)