Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30475
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.10c |mug77|atg5|autophagy associated protein Atg5 |Schiz...    80   3e-16
SPAC20G4.04c |hus1||checkpoint clamp complex protein Hus1|Schizo...    29   0.91 
SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Sc...    28   1.6  
SPAC926.08c |||Brix doamin protein Rpf2 |Schizosaccharomyces pom...    26   6.4  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    26   6.4  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    26   6.4  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    25   8.5  
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    25   8.5  

>SPBC4B4.10c |mug77|atg5|autophagy associated protein Atg5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 261

 Score = 80.2 bits (189), Expect = 3e-16
 Identities = 47/160 (29%), Positives = 78/160 (48%), Gaps = 6/160 (3%)
 Frame = +1

Query: 178 VPRLSYFPLVIDKMKRHFLRFISQENSDSEMWLDFNGQPLKWHYPIGFLYDLYCGNDPQL 357
           VPR SYF  ++  ++R     ++     SE WLD+NG PLKWH+P+G L+DL    DP  
Sbjct: 36  VPRQSYFAQILPNVQR----LLAPSIPLSECWLDYNGVPLKWHWPVGLLFDLLTVFDPDT 91

Query: 358 P-----WTLTVHFTKFPEDILLHCPNKDVVEAHYMSTVKEADVLKH-RGQVMSTMQKKDH 519
           P     W + +    FP   +L     D    ++ + +KE+D +++     +  + K + 
Sbjct: 92  PRAPVLWRIQLRSGLFPTTKILQMETMDTFRTYFFNCLKESDYVRNGSSSGIIALSKAET 151

Query: 520 NQLWLGLQNDKFDQFWAINRRLMESHGDNDGFKHIPLRIY 639
           +  W  + N  +  F  I  +++ S       K IPL+IY
Sbjct: 152 DTYWNAILNHDYYDFRPIAIKILFSKS-----KFIPLKIY 186


>SPAC20G4.04c |hus1||checkpoint clamp complex protein
           Hus1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 139 IMEIQQPDP-FYVMVPRLSYFPLVIDKMKRHFLRFISQENSDSEMWLDFN 285
           I E   P+P  ++ +P+L++   V+DK K    R I   N   E+ L  N
Sbjct: 140 IKEPTAPEPDCHIFLPQLNFLRHVVDKYKSLSDRIIMSANMSGELQLSVN 189


>SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -2

Query: 517 DPFFA*-LTSLVLCVSVHQPLSL*TYNVLLLHLCLGNEEECLQGTL*SVLSKSRVVED 347
           DP FA  +   +    V   LS  TYNVL   LC+  E+  L  T  +VL+ ++   D
Sbjct: 225 DPIFADYMLDAMTLFDVFPTLSQDTYNVLRACLCVSPEKRSLAKTREAVLAVTKWTTD 282


>SPAC926.08c |||Brix doamin protein Rpf2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -3

Query: 189 KSRHHNVKWIRLLNFHYFFLSKMKTYR*FSIPYFSKYLPVV 67
           K R HN+ W+R  N+    + ++      SI  FS   P+V
Sbjct: 94  KKRPHNLTWVRFFNYRVLDMIELGIVNYKSIQSFSA-TPIV 133


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +2

Query: 590 SHMVIMM-DSNTYHLGFILMMVYTINALSVLKILIIVEKRYNRMISELY 733
           +H+V+   D  T    FIL  +Y I  + ++ +LII+   +  +IS +Y
Sbjct: 258 THVVVCSTDDLTAISSFILSSIYKIRKVVIISLLIIIAGLF--LISSIY 304


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 468  ISLFHCRHIMCFYYIFVWAMKKNVFRELCE 379
            + LF   +++ +Y I V   K N+F ELC+
Sbjct: 1173 LELFDHPNVVSYYGIEVHREKVNIFMELCQ 1202


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +2

Query: 551  SLISFGLSTDVLWSHMVIMMDSNTYHLGFILMMVYT 658
            +LIS G   ++ +S  V  M+++T+H G I ++V T
Sbjct: 1310 TLISAGRIPNLDFSDSVTSMEASTFHDGSIRLVVVT 1345


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +1

Query: 415 PNKDVVEAHYMSTVKEADVLKHRGQVMSTMQKKDHNQLWL 534
           PN  VVE+         D ++HRG ++ ++    H +++L
Sbjct: 482 PNHLVVESRSHQHAYVQDEIRHRGDIVWSVLSHPHGKVYL 521


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,154,901
Number of Sequences: 5004
Number of extensions: 69988
Number of successful extensions: 166
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)