Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30475
(737 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0128 - 930461-930828,931223-931369,931567-931704,931888-93... 130 9e-31
11_06_0647 + 25870470-25870744,25870765-25871533 32 0.55
07_01_0676 + 5062778-5063089,5063912-5064194,5064883-5065976 29 3.9
12_02_1283 - 27532143-27532517,27532602-27532906,27533053-275333... 29 5.1
03_02_0349 - 7722461-7723069,7723494-7724221,7724281-7724641,772... 29 5.1
07_01_1088 + 9995442-9997736 28 8.9
02_05_1331 + 35736543-35736638,35737407-35737525,35737670-357377... 28 8.9
02_03_0104 + 15251177-15251516,15251630-15251883,15252001-152521... 28 8.9
>02_01_0128 -
930461-930828,931223-931369,931567-931704,931888-931975,
932068-932157,932249-932315,933411-933535,934079-934213
Length = 385
Score = 130 bits (315), Expect = 9e-31
Identities = 60/171 (35%), Positives = 92/171 (53%), Gaps = 1/171 (0%)
Frame = +1
Query: 76 EVLREIWDGKLPICFHLAQEEIMEIQQPDPFYVMVPRLSYFPLVIDKMKRHFLRFISQEN 255
E R +W G +P+ HL ++ + P PF + PR+ Y PL++ +K HF +
Sbjct: 14 EAARRVWGGAVPLQVHLHDADVTTLPPPPPFLTLGPRIGYLPLLVPIIKAHFSSTLPP-- 71
Query: 256 SDSEMWLDFNGQPLKWHYPIGFLYDLYCGNDPQLPWTLTVHFTKFPEDILLHCPNKDVVE 435
+W ++ G PLKW+ PIG LYDL C DP+ PW LTVHF +P +IL C +D V+
Sbjct: 72 GIDTVWFEYKGLPLKWYIPIGVLYDLLCA-DPERPWNLTVHFRGYPSEILTLCDGEDSVK 130
Query: 436 AHYMSTVKEAD-VLKHRGQVMSTMQKKDHNQLWLGLQNDKFDQFWAINRRL 585
YM+++KEA ++ + + M + D LW + D + I+ RL
Sbjct: 131 WSYMNSLKEAAFIITGNSKNVMNMSQADQGALWQSVMKGNLDGYMNISTRL 181
>11_06_0647 + 25870470-25870744,25870765-25871533
Length = 347
Score = 31.9 bits (69), Expect = 0.55
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +1
Query: 175 MVPRLSYFPLVIDKMKRHFLRFISQENSDSEMWLDF 282
+VP SY+ LV +K KRH LR +E + E L F
Sbjct: 41 IVPLYSYYVLVEEKQKRHLLRPSRKEKEEKEHLLVF 76
>07_01_0676 + 5062778-5063089,5063912-5064194,5064883-5065976
Length = 562
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Frame = +1
Query: 430 VEAHYMSTVKEADVLKHRGQVMSTMQKKDHNQLWLGLQNDKFDQFWAINRRL----MESH 597
V A+Y ST A++L+H + ++ N + + + + K D + R+ + +
Sbjct: 260 VAAYYGSTAAAAELLRHSPDAAEMLDREGRNAVHVAVSSGKVDALRCLLGRVRPAEVVNR 319
Query: 598 GDNDG 612
GDN G
Sbjct: 320 GDNSG 324
>12_02_1283 -
27532143-27532517,27532602-27532906,27533053-27533311,
27534412-27534618,27534726-27535181,27535866-27535963,
27536657-27536785,27537371-27537605,27538932-27539039,
27539110-27539160,27539261-27539445,27540207-27540274,
27541535-27541600,27541678-27541730,27542536-27542653,
27542743-27542844,27543525-27543682,27543763-27543840,
27543978-27544069,27544308-27544458
Length = 1097
Score = 28.7 bits (61), Expect = 5.1
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 9/81 (11%)
Frame = +1
Query: 115 CFHLAQEEIMEIQQPDPFY---------VMVPRLSYFPLVIDKMKRHFLRFISQENSDSE 267
CF + E+I +++Q DP ++V RL P++ +KM H LR + E S
Sbjct: 761 CFFIEAEKIEQLRQSDPSIEIFLWQESALVVARL-LLPMMFEKMATHELRVLITERSTMN 819
Query: 268 MWLDFNGQPLKWHYPIGFLYD 330
+++ L+ ++ IG L +
Sbjct: 820 IYIKGEEIELEQNF-IGILLE 839
>03_02_0349 - 7722461-7723069,7723494-7724221,7724281-7724641,
7724751-7725072,7725183-7725661,7726157-7726430,
7726598-7726884,7726966-7727388,7727545-7727890,
7728011-7728328,7729817-7731081
Length = 1803
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -2
Query: 424 LCLGNEEECLQGTL*SVLSKSRVVEDHYHNTNRTKILWDS 305
LC + EE + V S +++VE ++N NR +++W S
Sbjct: 1105 LCKVSMEELRSASDPRVFSLTKIVEIAHYNMNRIRLVWSS 1144
>07_01_1088 + 9995442-9997736
Length = 764
Score = 27.9 bits (59), Expect = 8.9
Identities = 18/76 (23%), Positives = 34/76 (44%)
Frame = +1
Query: 307 YPIGFLYDLYCGNDPQLPWTLTVHFTKFPEDILLHCPNKDVVEAHYMSTVKEADVLKHRG 486
Y F++ +Y G+D + L F + + + H N DV+E + + ++ G
Sbjct: 43 YLRSFIWFVYLGSDALAIYALATLFNRHKKQDVGHTHNNDVLEILWAPIL----LIHLGG 98
Query: 487 QVMSTMQKKDHNQLWL 534
Q T + N+LW+
Sbjct: 99 QDSITAYNIEDNELWM 114
>02_05_1331 +
35736543-35736638,35737407-35737525,35737670-35737715,
35738117-35738172,35738452-35738547,35738844-35738961,
35739406-35739672,35740023-35740124,35740302-35740659,
35740750-35740863,35741045-35741676,35741895-35742103,
35742597-35742819,35743419-35743538,35743888-35743914,
35744281-35745045,35745431-35748511
Length = 2142
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = +1
Query: 496 STMQKKDHNQLWLGLQNDKFDQFWAIN 576
ST QKK +LW+GL+N FD W IN
Sbjct: 82 STFQKK---KLWIGLENFVFD--WLIN 103
>02_03_0104 +
15251177-15251516,15251630-15251883,15252001-15252129,
15252578-15252985
Length = 376
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 424 DVVEAHYMSTVKEADVLK-HRGQVMSTMQKKDHNQLWLGLQNDK 552
DVV Y+ + +E+ LK +RG M+ + H QL+ QN K
Sbjct: 333 DVVAKAYLLSREESRSLKFNRGDEMAVFSPRLHQQLYAEWQNSK 376
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,116,848
Number of Sequences: 37544
Number of extensions: 402360
Number of successful extensions: 892
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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