Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30475
         (737 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025726-15|ABA00156.1|  273|Caenorhabditis elegans Atg (autopha...   143   1e-34
AC025726-16|ABA00157.1|  163|Caenorhabditis elegans Atg (autopha...    96   3e-20
U00047-12|AAA50685.1|  332|Caenorhabditis elegans Nuclear hormon...    31   1.1  
U80028-9|AAN73867.1|  372|Caenorhabditis elegans Serpentine rece...    29   3.4  
U80814-2|AAB37993.1|  335|Caenorhabditis elegans Serpentine rece...    28   7.9  
AF040650-3|ABE73333.1|  836|Caenorhabditis elegans Hypothetical ...    28   7.9  
AF040650-2|AAT81190.1|  939|Caenorhabditis elegans Hypothetical ...    28   7.9  
AF040650-1|AAB95011.1|  952|Caenorhabditis elegans Hypothetical ...    28   7.9  

>AC025726-15|ABA00156.1|  273|Caenorhabditis elegans Atg (autophagy)
           related protein5, isoform a protein.
          Length = 273

 Score =  143 bits (347), Expect = 1e-34
 Identities = 78/214 (36%), Positives = 119/214 (55%), Gaps = 1/214 (0%)
 Frame = +1

Query: 70  DREVLREIWDGKLPICFHLAQEEIMEIQQPDPFYVMVPRLSYFPLVIDKMKRHFLRFISQ 249
           D EV R++W+  +P  F L Q       +P PFY M+PR SY  L I K+   F R    
Sbjct: 2   DYEVCRKVWESHVPCQFTL-QSSGGTHGEPLPFYTMLPRFSYLALAIQKVLSSFNRRDDG 60

Query: 250 ENSDSE-MWLDFNGQPLKWHYPIGFLYDLYCGNDPQLPWTLTVHFTKFPEDILLHCPNKD 426
           E   S+ MWL+ NG PLK + PIG +YD    ++      + V  ++ P    +   ++D
Sbjct: 61  EKVHSDKMWLEHNGIPLKMYIPIGVIYDQANLSENDSILEIIVRTSQPPPQFQM--VDRD 118

Query: 427 VVEAHYMSTVKEADVLKHRGQVMSTMQKKDHNQLWLGLQNDKFDQFWAINRRLMESHGDN 606
           ++EA +M  +KEAD LK + ++   M K +  QLW  + N+ FD+FW I ++LME+   N
Sbjct: 119 MMEAMFMQNIKEADYLKTKAEITKNMMKDESAQLWRSVCNNNFDEFWTIVQKLMETSEGN 178

Query: 607 DGFKHIPLRIYTDDGVYNQRLVCPKNTDNSRKTL 708
           + F HIPLR+Y  +  + Q L+  K+ D S +T+
Sbjct: 179 E-FAHIPLRVYVKNQAFKQALITAKHPDGSLRTI 211


>AC025726-16|ABA00157.1|  163|Caenorhabditis elegans Atg (autophagy)
           related protein5, isoform b protein.
          Length = 163

 Score = 95.9 bits (228), Expect = 3e-20
 Identities = 56/160 (35%), Positives = 84/160 (52%), Gaps = 1/160 (0%)
 Frame = +1

Query: 70  DREVLREIWDGKLPICFHLAQEEIMEIQQPDPFYVMVPRLSYFPLVIDKMKRHFLRFISQ 249
           D EV R++W+  +P  F L Q       +P PFY M+PR SY  L I K+   F R    
Sbjct: 2   DYEVCRKVWESHVPCQFTL-QSSGGTHGEPLPFYTMLPRFSYLALAIQKVLSSFNRRDDG 60

Query: 250 ENSDSE-MWLDFNGQPLKWHYPIGFLYDLYCGNDPQLPWTLTVHFTKFPEDILLHCPNKD 426
           E   S+ MWL+ NG PLK + PIG +YD    ++      + V  ++ P    +   ++D
Sbjct: 61  EKVHSDKMWLEHNGIPLKMYIPIGVIYDQANLSENDSILEIIVRTSQPPPQFQM--VDRD 118

Query: 427 VVEAHYMSTVKEADVLKHRGQVMSTMQKKDHNQLWLGLQN 546
           ++EA +M  +KEAD LK + ++   M K +  QLW  + N
Sbjct: 119 MMEAMFMQNIKEADYLKTKAEITKNMMKDESAQLWRSVCN 158


>U00047-12|AAA50685.1|  332|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 9 protein.
          Length = 332

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 25/64 (39%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = -2

Query: 532 AITDCDPFFA*LTSLVL-CVSVHQPLSL*TYNVLLLHLCLGNEEECLQGTL*SVLSKSRV 356
           AI  CDP    LT+     +S HQ +    YN  LL LCL NE  C       +LS   V
Sbjct: 243 AIFVCDPTANNLTARGREILSFHQNV----YNDALLQLCLRNEGSCGPARFNDLLSVCHV 298

Query: 355 VEDH 344
           V  H
Sbjct: 299 VNKH 302


>U80028-9|AAN73867.1|  372|Caenorhabditis elegans Serpentine
           receptor, class w protein117 protein.
          Length = 372

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +2

Query: 563 FGLSTDVLWSHMVIM-MDSNTYHLGFILMMVYTINALSVLKILIIVEKRYNRMI 721
           +G S   +W +     M     H+GFI  M+ T+N  +   I +++  +Y + I
Sbjct: 288 YGSSLGAVWMYKNAPGMQQILAHVGFIFSMLITLNTCTHFFICLLISSQYRKTI 341


>U80814-2|AAB37993.1|  335|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 8 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -2

Query: 499 LTSLVLCVSV--HQPLSL*TYNVLLLHLCLGNEEECLQGTL 383
           L +L LC     H P  + TY+V+L+++ L N   C+ G L
Sbjct: 21  LVNLFLCYVALFHSPPIIRTYSVILINITLTNIGVCITGFL 61


>AF040650-3|ABE73333.1|  836|Caenorhabditis elegans Hypothetical
           protein T04B8.5c protein.
          Length = 836

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
 Frame = +2

Query: 539 YKMTS-LISFGLSTDVLWSHMVIMMDSNTYHLGFILMMVYTINALSVLKILIIVEKRYNR 715
           Y MT+ L++   S  +L +   +MMD+N +H  FIL+ +++    S +  LI   +  NR
Sbjct: 250 YVMTAFLMATTSSRYLLQNDYTVMMDTN-FHRVFILIGIFSTTLFSSMSNLIGSSRVLNR 308

Query: 716 M 718
           +
Sbjct: 309 L 309


>AF040650-2|AAT81190.1|  939|Caenorhabditis elegans Hypothetical
           protein T04B8.5b protein.
          Length = 939

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
 Frame = +2

Query: 539 YKMTS-LISFGLSTDVLWSHMVIMMDSNTYHLGFILMMVYTINALSVLKILIIVEKRYNR 715
           Y MT+ L++   S  +L +   +MMD+N +H  FIL+ +++    S +  LI   +  NR
Sbjct: 353 YVMTAFLMATTSSRYLLQNDYTVMMDTN-FHRVFILIGIFSTTLFSSMSNLIGSSRVLNR 411

Query: 716 M 718
           +
Sbjct: 412 L 412


>AF040650-1|AAB95011.1|  952|Caenorhabditis elegans Hypothetical
           protein T04B8.5a protein.
          Length = 952

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
 Frame = +2

Query: 539 YKMTS-LISFGLSTDVLWSHMVIMMDSNTYHLGFILMMVYTINALSVLKILIIVEKRYNR 715
           Y MT+ L++   S  +L +   +MMD+N +H  FIL+ +++    S +  LI   +  NR
Sbjct: 366 YVMTAFLMATTSSRYLLQNDYTVMMDTN-FHRVFILIGIFSTTLFSSMSNLIGSSRVLNR 424

Query: 716 M 718
           +
Sbjct: 425 L 425


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,380,860
Number of Sequences: 27780
Number of extensions: 390915
Number of successful extensions: 1003
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)