Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30475
         (737 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g17290.1 68418.m02025 autophagy protein Apg5 family contains ...   125   3e-29
At1g49730.3 68414.m05576 protein kinase family protein contains ...    32   0.35 
At1g49730.2 68414.m05577 protein kinase family protein contains ...    32   0.35 
At1g49730.1 68414.m05575 protein kinase family protein contains ...    32   0.35 
At1g74800.1 68414.m08666 galactosyltransferase family protein co...    30   1.4  
At1g10040.1 68414.m01132 expressed protein non-consensus GC dono...    29   3.2  
At4g01720.1 68417.m00223 WRKY family transcription factor simila...    28   5.6  
At5g18950.1 68418.m02251 pentatricopeptide (PPR) repeat-containi...    28   7.4  
At1g64580.1 68414.m07320 pentatricopeptide (PPR) repeat-containi...    28   7.4  
At4g01830.1 68417.m00240 multidrug resistance P-glycoprotein, pu...    27   9.8  
At3g28380.1 68416.m03546 P-glycoprotein, putative similar to P-g...    27   9.8  
At2g23360.1 68415.m02790 transport protein-related contains Pfam...    27   9.8  

>At5g17290.1 68418.m02025 autophagy protein Apg5 family contains
           Pfam profile: PF04106 autophagy protein Apg5
          Length = 337

 Score =  125 bits (302), Expect = 3e-29
 Identities = 54/172 (31%), Positives = 98/172 (56%), Gaps = 1/172 (0%)
 Frame = +1

Query: 73  REVLREIWDGKLPICFHLAQEEIMEIQQPDPFYVMVPRLSYFPLVIDKMKRHFLRFISQE 252
           +E ++ +W+G +P+  HL + ++     P P  V+ PR+ Y PL+I  +K +F    S  
Sbjct: 3   KEAVKYVWEGAIPLQIHLHKSDVASHPAPPPALVLAPRIGYLPLLIPLIKPYFKD--SLP 60

Query: 253 NSDSEMWLDFNGQPLKWHYPIGFLYDLYCGNDPQLPWTLTVHFTKFPEDILLHCPNKDVV 432
             +  +W D+ G PLKW+ P G L+DL C  +P+ PW LT+HF  +P +IL+ C  +D V
Sbjct: 61  PGEDSIWFDYKGFPLKWYIPTGVLFDLLCA-EPERPWNLTIHFRGYPCNILIPCEGEDSV 119

Query: 433 EAHYMSTVKEAD-VLKHRGQVMSTMQKKDHNQLWLGLQNDKFDQFWAINRRL 585
           + ++++++KEA  ++    + +  M + D   LW  + N   D +  ++ +L
Sbjct: 120 KWNFVNSLKEAQYIINGNCKNVMNMSQSDQEDLWTSVMNGDLDAYTRLSPKL 171


>At1g49730.3 68414.m05576 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain; similar to AtPK2324
           (GI:1785621) [Arabidopsis thaliana]; similar to
           receptor-like protein kinase (GI:1644291) [Catharanthus
           roseus]; similar to somatic embryogenesis receptor-like
           kinase (GI:2224911) [Daucus carota]
          Length = 394

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = +2

Query: 566 GLSTDVLWSHMVIMMDSNTYHLGFI--LMMVYTINALSVLKILIIVEKRYNRMISE 727
           G+S     S M     +N YHL  +  + +V T  AL++L +L+I+ +R NR + E
Sbjct: 173 GISPSNSDSQMTTSRSTNPYHLTMVPTIGIVVTAVALTMLVVLVILIRRKNRELDE 228


>At1g49730.2 68414.m05577 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain; similar to AtPK2324
           (GI:1785621) [Arabidopsis thaliana]; similar to
           receptor-like protein kinase (GI:1644291) [Catharanthus
           roseus]; similar to somatic embryogenesis receptor-like
           kinase (GI:2224911) [Daucus carota]
          Length = 450

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = +2

Query: 566 GLSTDVLWSHMVIMMDSNTYHLGFI--LMMVYTINALSVLKILIIVEKRYNRMISE 727
           G+S     S M     +N YHL  +  + +V T  AL++L +L+I+ +R NR + E
Sbjct: 229 GISPSNSDSQMTTSRSTNPYHLTMVPTIGIVVTAVALTMLVVLVILIRRKNRELDE 284


>At1g49730.1 68414.m05575 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain; similar to AtPK2324
           (GI:1785621) [Arabidopsis thaliana]; similar to
           receptor-like protein kinase (GI:1644291) [Catharanthus
           roseus]; similar to somatic embryogenesis receptor-like
           kinase (GI:2224911) [Daucus carota]
          Length = 663

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = +2

Query: 566 GLSTDVLWSHMVIMMDSNTYHLGFI--LMMVYTINALSVLKILIIVEKRYNRMISE 727
           G+S     S M     +N YHL  +  + +V T  AL++L +L+I+ +R NR + E
Sbjct: 229 GISPSNSDSQMTTSRSTNPYHLTMVPTIGIVVTAVALTMLVVLVILIRRKNRELDE 284


>At1g74800.1 68414.m08666 galactosyltransferase family protein
           contains Pfam profile: PF01762 galactosyltransferase
          Length = 672

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +1

Query: 100 GKLPICFHLAQEEIMEIQQPDPFYVMVPRLSYFPLVIDKMKRHFLRFISQENSDSEMWLD 279
           GK  + +    EE        P YV+   ++ F  ++DK +RH LR    E+    MW++
Sbjct: 559 GKWAVTYEEWPEEDYPPYANGPGYVLSSDIARF--IVDKFERHKLRLFKMEDVSVGMWVE 616


>At1g10040.1 68414.m01132 expressed protein non-consensus GC donor
           splice site at exon boundary 21576
          Length = 412

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 20/84 (23%), Positives = 39/84 (46%)
 Frame = +1

Query: 232 LRFISQENSDSEMWLDFNGQPLKWHYPIGFLYDLYCGNDPQLPWTLTVHFTKFPEDILLH 411
           LR  S E+ + ++ +DF G+  +  + +  +  L  G+     +       K+P+D+L+H
Sbjct: 56  LRAESDESGNVDLTVDFPGERTEPTHLVVMVNGLI-GSAQNWRFAAKQMLKKYPQDLLVH 114

Query: 412 CPNKDVVEAHYMSTVKEADVLKHR 483
           C  ++    H   T    DV+  R
Sbjct: 115 CSKRN----HSTQTFDGVDVMGER 134


>At4g01720.1 68417.m00223 WRKY family transcription factor similar
           to wild oat DNA-binding protein ABF2, GenBank accession
           number Z48431
          Length = 489

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 409 HCPNKDVVEAHYMSTVKEADVLKHRGQ 489
           H PN+  VE H+ S++KE D    + Q
Sbjct: 29  HQPNESPVERHHESSIKEVDFFAAKSQ 55


>At5g18950.1 68418.m02251 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 483

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +1

Query: 520 NQLWLG-LQNDKFDQFWAINRRLMESHGDNDGFKHIPLRIYTDDG 651
           N + LG L+  K D+FW +++ ++ES  D++  + + +R   D G
Sbjct: 184 NSVLLGCLKARKLDRFWELHKEMVESEFDSERIRCL-IRALCDGG 227


>At1g64580.1 68414.m07320 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587; contains Pfam profile PF01535: PPR
           repeat
          Length = 1052

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = +1

Query: 136 EIMEIQQPDPFYV--MVPRLSYFPLVIDKMKRHFLRFISQENSDSEMWLDFNGQPLKWHY 309
           EI E  + +PF++  ++P +++   V   ++RH+L      N ++ +   F+G     HY
Sbjct: 518 EIWERSKSNPFWMQRLIP-IAFSSSVKGFVRRHYLLLERGNNPETSLSRSFSGASHHHHY 576

Query: 310 PIGFLYDLYC 339
                 +L+C
Sbjct: 577 RERLRNELHC 586


>At4g01830.1 68417.m00240 multidrug resistance P-glycoprotein,
           putative similar to multidrug resistant P-glycoprotein
           GI:4204793 from [Solanum tuberosum]
          Length = 1230

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/36 (36%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
 Frame = +1

Query: 427 VVEAHYMSTVKEADVLK--HRGQVMSTMQKKDHNQL 528
           V+ AH +STV+ AD++   HRG++   +++  H++L
Sbjct: 544 VIVAHRLSTVRNADIIAVIHRGKI---VEEGSHSEL 576


>At3g28380.1 68416.m03546 P-glycoprotein, putative similar to
           P-glycoprotein homologue GI:2292907 from [Hordeum
           vulgare subsp. vulgare]
          Length = 1240

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
 Frame = +1

Query: 427 VVEAHYMSTVKEADVL--KHRGQVMST 501
           +V AH +ST++ ADV+   H GQ++ T
Sbjct: 550 IVIAHRLSTIRNADVICVIHNGQIVET 576


>At2g23360.1 68415.m02790 transport protein-related contains Pfam
           PF05911: Plant protein of unknown function (DUF869)
           profile; weak similarity to Intracellular protein
           transport protein USO1 (Swiss-Prot:P25386)
           [Saccharomyces cerevisiae]
          Length = 886

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 36  DQHINNY*NGQRQGGTSRNMGWKTTDMFSSCSR 134
           ++H++N  + +  G T+R + WKTT++ S   R
Sbjct: 555 ERHVSNRESERLSGYTARVLQWKTTELSSVLQR 587


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,169,533
Number of Sequences: 28952
Number of extensions: 354851
Number of successful extensions: 859
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)