Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30470
         (736 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332...    32   0.54 
06_02_0123 + 12104187-12104252,12105455-12105775                       31   0.72 
06_02_0122 - 12095385-12095713,12096018-12096120                       31   0.72 
06_02_0125 + 12122812-12122911,12123647-12123993                       29   5.1  
06_02_0120 + 12055076-12055175,12055322-12055725                       29   5.1  
03_01_0410 - 3166651-3166815,3166901-3167218,3167305-3167652           28   6.7  
02_02_0662 - 12736904-12737214,12737632-12737914                       28   6.7  

>01_01_0446 +
           3321832-3322232,3322398-3322455,3322810-3323748,
           3324504-3324654,3324740-3324818,3325826-3325934
          Length = 578

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 16/37 (43%), Positives = 17/37 (45%)
 Frame = +1

Query: 487 GYRSGYNQYRSSFDRYPATNAGNFFGGYGDGYSDNFR 597
           GY+        S  R PA   G   GGYG G  DNFR
Sbjct: 522 GYKISVAMAEKSAPRAPAYGHGGGRGGYGGGRRDNFR 558


>06_02_0123 + 12104187-12104252,12105455-12105775
          Length = 128

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
 Frame = +1

Query: 478 GYPGYRSGYNQ-----YRSSFDRYPATNAGNFFGGYGDGYS 585
           GYP Y  GY       Y   +  Y     G + GGYG GYS
Sbjct: 73  GYPRYGGGYGGGYGCGYGGGYGGYGGGYGGGYGGGYGGGYS 113


>06_02_0122 - 12095385-12095713,12096018-12096120
          Length = 143

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +1

Query: 478 GYPGYRSGYNQ-YRSSFDRYPATNAGNFFGGYGDGYSDNF 594
           G+PGY  GY   Y   +      + G + GGYG GY   +
Sbjct: 88  GHPGYGGGYGGGYGRGYGGGYGGSGGGYGGGYGGGYGGGY 127


>06_02_0125 + 12122812-12122911,12123647-12123993
          Length = 148

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
 Frame = +1

Query: 478 GYPGYRSGYNQ-YRSSFD---RYPATNAGNFFGGYGDGYSDNF 594
           G+PGY  GY   Y   +     +P  ++G + GGYG GY   +
Sbjct: 86  GHPGYGGGYGGGYGQGYGCGYGHPG-HSGGYGGGYGGGYGGGY 127


>06_02_0120 + 12055076-12055175,12055322-12055725
          Length = 167

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/35 (40%), Positives = 14/35 (40%)
 Frame = +1

Query: 478 GYPGYRSGYNQYRSSFDRYPATNAGNFFGGYGDGY 582
           G PGY  GY Q        P    G    GYG GY
Sbjct: 75  GQPGYGGGYGQPGYGSGYGPGYGGGGSGPGYGGGY 109



 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/35 (40%), Positives = 14/35 (40%)
 Frame = +1

Query: 478 GYPGYRSGYNQYRSSFDRYPATNAGNFFGGYGDGY 582
           G PGY SGY          P    G    GYG GY
Sbjct: 84  GQPGYGSGYGPGYGGGGSGPGYGGGYGSPGYGGGY 118


>03_01_0410 - 3166651-3166815,3166901-3167218,3167305-3167652
          Length = 276

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 2/95 (2%)
 Frame = -2

Query: 537 GVPVETGPVLVVSRSVARVTGTAALISGSVTSIARVP*KTTEASLITA--LISALVTTIV 364
           G PVE      +  + A+ TGT   + G + + A+       A+L TA       +  ++
Sbjct: 165 GTPVERSDAAAIQAAEAKATGTDTYMPGGLAAQAQ---SAAVANLWTARDADKTKLGDVL 221

Query: 363 TSKTALITLTRITETGVAVT*TGISVTETRAAVAR 259
           ++ TA +   +  E+G A    G  +     A AR
Sbjct: 222 SNATAKLAADKEVESGDAARVAGAEMRNKPGAAAR 256


>02_02_0662 - 12736904-12737214,12737632-12737914
          Length = 197

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = -2

Query: 549 SVGRGVPVETGPVLVVSRSVARVTGTAALISGSVTSIARVP 427
           S G G  VE  P + VSRS AR+ G+ + ++GSV    + P
Sbjct: 55  SSGPGADVEEEP-MAVSRSGARMHGSCSPMAGSVVPGGKEP 94


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,453,596
Number of Sequences: 37544
Number of extensions: 202613
Number of successful extensions: 615
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)