Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30470
         (736 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ298318-1|CAC83675.1| 1349|Homo sapiens mucin 5 protein.              30   7.5  
BC001731-1|AAH01731.2|  709|Homo sapiens cell cycle associated p...    30   9.9  

>AJ298318-1|CAC83675.1| 1349|Homo sapiens mucin 5 protein.
          Length = 1349

 Score = 30.3 bits (65), Expect = 7.5
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = -2

Query: 474 TAALISGSVTSIARVP*KTTEASLITALISALVTTIVTSKTALITLTRITETGVAVT 304
           T +  S   TSI+  P  +T ++  ++ ISA  T+I+++ T   T +  T T  A T
Sbjct: 371 TTSTTSTPQTSISSAPTSSTTSAPTSSTISARTTSIISAPTTSTTSSPTTSTTSATT 427


>BC001731-1|AAH01731.2|  709|Homo sapiens cell cycle associated
           protein 1 protein.
          Length = 709

 Score = 29.9 bits (64), Expect = 9.9
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 8/45 (17%)
 Frame = +1

Query: 487 GYRSGYNQYRSSFDRYPAT-------NAGNFFGGY-GDGYSDNFR 597
           G+R GY+ YR SF   P +       +A   + GY  DGY  NF+
Sbjct: 631 GFRGGYDGYRPSFSNTPNSGYTQSQFSAPRDYSGYQRDGYQQNFK 675


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,830,690
Number of Sequences: 237096
Number of extensions: 1083464
Number of successful extensions: 3262
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3258
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8735159784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)