Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30470
         (736 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2...    29   4.2  
At3g26790.1 68416.m03351 transcriptional regulator (FUSCA3) iden...    28   5.6  
At2g25540.1 68415.m03057 cellulose synthase, catalytic subunit, ...    28   5.6  
At2g21300.1 68415.m02535 kinesin motor family protein contains P...    27   9.8  

>At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2a)
           almost identical to 26S proteasome AAA-ATPase subunit
           RPT2a (GI:6652880) {Arabidopsis thaliana}; Drosophila
           melanogaster 26S proteasome subunit 4 ATPase,
           PID:g1066065
          Length = 443

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 383 ADIRAVIREASVVFQGTRAMEVTDPDIRAA 472
           ADI+A+  EA ++    R M+VT PD + A
Sbjct: 396 ADIKAICTEAGLLALRERRMKVTHPDFKKA 425


>At3g26790.1 68416.m03351 transcriptional regulator (FUSCA3)
           identical to FUSCA3 GB:AAC35247 [Arabidopsis thaliana]
           (Plant J. 6, 379-387 (1994))
          Length = 313

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +1

Query: 550 GNFFGGYGDGYSDNFRVVARSTNEKKKVETV 642
           G+F   Y D YS+N+ + AR  +E+++V+ +
Sbjct: 172 GDFIMVYQDLYSNNYVIQARKASEEEEVDVI 202


>At2g25540.1 68415.m03057 cellulose synthase, catalytic subunit,
           putative similar to cellulose synthase-1 [gi:9622874]
           and -2 [gi:9622876] from Zea mays
          Length = 1065

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/58 (24%), Positives = 26/58 (44%)
 Frame = +1

Query: 562 GGYGDGYSDNFRVVARSTNEKKKVETVA*VNRNKIHFLSCRLSPYXNTVVCANRLMGI 735
           G Y +G    F     + +E + V+         +HF S R++PY   +V    ++G+
Sbjct: 217 GKYHEGKGGEFEGTGSNGDELQMVDDARLPMSRVVHFPSARMTPYRIVIVLRLIILGV 274


>At2g21300.1 68415.m02535 kinesin motor family protein contains Pfam
           profile: kinesin motor domain PF00225
          Length = 862

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 371 VVTKADIRAVIREASVVFQGTRAMEVTDPDIRAAVPVTRATDLDTT 508
           V TKA I  V+ + ++V Q  R +   + ++R   P T + D   T
Sbjct: 346 VTTKAQINVVMSDKALVKQLQRELARLESELRNPAPATSSCDCGVT 391


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,138,622
Number of Sequences: 28952
Number of extensions: 164453
Number of successful extensions: 506
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)