Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30469
(764 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55174| Best HMM Match : AP_endonuc_2 (HMM E-Value=2.4e-36) 108 6e-24
SB_59052| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.19
SB_50102| Best HMM Match : Phage_fiber (HMM E-Value=8.2e-06) 30 2.3
SB_23440| Best HMM Match : BAT2_N (HMM E-Value=7.5) 30 2.3
SB_13226| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_14151| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_34303| Best HMM Match : Pkinase (HMM E-Value=0) 29 5.4
SB_33304| Best HMM Match : RNA_pol_Rpb1_1 (HMM E-Value=7.00649e-45) 29 5.4
SB_51071| Best HMM Match : SNF7 (HMM E-Value=0.16) 28 7.2
SB_36973| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_55174| Best HMM Match : AP_endonuc_2 (HMM E-Value=2.4e-36)
Length = 260
Score = 108 bits (259), Expect = 6e-24
Identities = 67/232 (28%), Positives = 112/232 (48%), Gaps = 2/232 (0%)
Frame = +2
Query: 74 MKFCANLSFMFAEASSILERYALAKDAGFKAVESGFPFGFSLEQVRNAKQSAGLQQIAIN 253
MK ANLS +F E ++ER A AGF VE FP+ +++ A ++AG+ IN
Sbjct: 1 MKIAANLSLLFTELP-LIERVVAAAAAGFDGVEIQFPYELPAIRLKEALEAAGMPLRLIN 59
Query: 254 LKTGDTTKGEVGVTSVPGKEDEFKTNLNTTIEYAKALDAKKIHIMAGKV-ENPTPKH-WE 427
L GD G G+ ++P ++ EF L + YA + ++++ G++ + P+
Sbjct: 60 LPAGDLMSGGPGLAAMPARQAEFDLALKDALSYAAMVRPALVNVLPGRLADGVEPEQALA 119
Query: 428 TFEKNLLYAVDVLKGENIQGLIEPINQYSMPKYFLSDYGRAVDIIKRIDSPNLRLMLDIF 607
NL + + I ++E IN +P + ++ + ++K + PNL D++
Sbjct: 120 CLVDNLHKTAEAFQLLGIGVVVEAINPLDIPGFLINTPEQLDALLKAVAHPNLAAQYDLY 179
Query: 608 HLQQIAGDITHNITKLLPYIGHVQIAQVPNRNEPDTPGEINYKYVLEHLAKS 763
H+ + D+ I L IGHVQ A P R P T GE+ + +L L S
Sbjct: 180 HMARQGLDVQAGIVLLAGRIGHVQFADYPGRGAPGT-GELQFAPLLTALRDS 230
>SB_59052| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 33.5 bits (73), Expect = 0.19
Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Frame = +2
Query: 290 VTSVPGKEDEFKTNLNTTIEYAKALDAKKIHIMAGKVENPTPKHWET---FEKNLLYAVD 460
+ SV E+ ++ +L+ +++ +KA ++ + +M GK +PT + W+T F N L+ +
Sbjct: 84 ILSVRDNEEIWRKSLDKSLQVSKA-SSRSLWMMVGKQISPTGRKWKTIQDFISNTLFLKN 142
Query: 461 VLKGENI 481
K NI
Sbjct: 143 TDKDSNI 149
>SB_50102| Best HMM Match : Phage_fiber (HMM E-Value=8.2e-06)
Length = 274
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = -2
Query: 676 HMSNVWQ*FRNIMSNVTSDLLKMKNVQHQSQIWTVNTFNNVHSSSIITQ 530
H S++W N N S LL N H S++WT N H+SS+ TQ
Sbjct: 17 HNSSLWT-QGNTTHN--SSLLTQGNTTHNSRLWTQG--NTTHNSSLWTQ 60
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/49 (38%), Positives = 24/49 (48%)
Frame = -2
Query: 676 HMSNVWQ*FRNIMSNVTSDLLKMKNVQHQSQIWTVNTFNNVHSSSIITQ 530
H S++W N N S LL N H S +WT N H+SS+ TQ
Sbjct: 174 HNSSLWT-QGNTTHN--SSLLTQGNTTHNSSLWTQG--NTTHNSSLWTQ 217
>SB_23440| Best HMM Match : BAT2_N (HMM E-Value=7.5)
Length = 262
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = +2
Query: 608 HLQQIAGDITHNITKLLPYIG---HVQIAQVPNRNEPDT 715
H QQ+A +IT+N K P IG H Q AQ N P T
Sbjct: 210 HHQQLAQNITNNRPKTSPTIGPKHHQQSAQNNTNNRPKT 248
>SB_13226| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = -2
Query: 730 VYLSGRVRLVTIRNLSYLHMSNVWQ-*FRNIMSNVTSDLLKMKNVQH-QSQIWTVNTFN 560
VY+ G VRL T +L + +W+ ++ I+ V + + +KN H + ++ TVN +N
Sbjct: 17 VYIDGGVRLGTDARSVFLGRTVIWELAYKRIVFEVPGN-ITVKNAMHCEQKVVTVNDYN 74
>SB_14151| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 241
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/49 (38%), Positives = 24/49 (48%)
Frame = -2
Query: 676 HMSNVWQ*FRNIMSNVTSDLLKMKNVQHQSQIWTVNTFNNVHSSSIITQ 530
H S++W N N S LL N H S +WT N H+SS+ TQ
Sbjct: 141 HNSSLWT-QGNTTHN--SSLLTQGNTTHNSSLWTQG--NTTHNSSLWTQ 184
>SB_34303| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 226
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = +2
Query: 545 RAVDIIKRIDS---PNLRLMLDIFHLQQIAGDITH 640
R + ++K+ID+ PN+ +LDIFH+ + TH
Sbjct: 52 REIALLKQIDNFAHPNVVRLLDIFHIPMLTARETH 86
>SB_33304| Best HMM Match : RNA_pol_Rpb1_1 (HMM E-Value=7.00649e-45)
Length = 638
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +2
Query: 530 LSDYGRAVDII--KRIDSPNLRLMLDIFHLQQIAGDITHNITKLLPYIGHVQIAQVPNRN 703
++ G AV +I + I P +L L FH+ +AG ++ + + + G +++ +
Sbjct: 508 MTQKGEAVGVIAAQSIGEPGTQLTLRTFHVGGVAGGLSEESSIITKFKGRLEVEDLKTVK 567
Query: 704 EPDTPGE 724
D G+
Sbjct: 568 GEDADGK 574
>SB_51071| Best HMM Match : SNF7 (HMM E-Value=0.16)
Length = 417
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -2
Query: 175 RFYSLKSSVFSQSISFQNGRSFSKHKRQISTEFHYNKI 62
R +S + S S S +NG+S + H RQ++ + ++KI
Sbjct: 285 RQHSSATGCSSNSTSRKNGKSSATHNRQMTNGYSHSKI 322
>SB_36973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -2
Query: 622 DLLKMKNVQHQSQI-WTVNTFNNVHSSSIITQEIFGHRILVDWFD 491
D++ +N Q + NTFN+ S + + IFGH DW +
Sbjct: 153 DMMMSRNPQQMQNLDHAANTFNDCQSHTYQSNTIFGH---ADWME 194
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,100,585
Number of Sequences: 59808
Number of extensions: 439836
Number of successful extensions: 1249
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1246
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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