Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30468
         (519 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0033 + 202703-202705,203397-203458,203566-203665,203875-20...    27   6.8  
12_01_0708 - 6137865-6140909                                           27   9.0  
06_02_0046 + 10928708-10928798,10929997-10930077,10930567-109306...    27   9.0  
03_05_0613 + 26124714-26124857,26125692-26126330,26126455-261266...    27   9.0  

>02_01_0033 +
           202703-202705,203397-203458,203566-203665,203875-203916,
           204264-204305,204437-204589,206559-207221
          Length = 354

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = -1

Query: 129 NVLRCSPKLFIECRALINPWVRSVSD---RSPGVSIHRTRDY 13
           N+L+ +  L  +C+AL +PW  SV +   +     +HR  DY
Sbjct: 72  NLLKENMVLRDQCKALSSPWSTSVGELKNKQADDDVHRHEDY 113


>12_01_0708 - 6137865-6140909
          Length = 1014

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 98  IKSFGEQRSTLLQCKSSVNKTCGG 169
           I+   +Q S LL+ K+S NKT GG
Sbjct: 43  IQCLPDQASALLRLKNSFNKTAGG 66


>06_02_0046 +
           10928708-10928798,10929997-10930077,10930567-10930685,
           10931275-10931894,10931992-10933184,10933280-10933359,
           10933751-10933846,10933931-10934004,10936007-10936151,
           10936323-10936487
          Length = 887

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +2

Query: 317 KGQPPTTPQCNGAASPWGNRLH 382
           KGQP     C G  S W N LH
Sbjct: 816 KGQPDLAELCKGLPSGWQNILH 837


>03_05_0613 +
           26124714-26124857,26125692-26126330,26126455-26126695,
           26126913-26127496
          Length = 535

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -1

Query: 147 DDLHCNNVLRCSPKLFIECRALINPWVRSVSDR 49
           DD+    + R +P+    CR +  PW   V DR
Sbjct: 152 DDVLAEVLRRLAPRCLAACRCVCKPWRDLVDDR 184


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,132,864
Number of Sequences: 37544
Number of extensions: 308438
Number of successful extensions: 714
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)