Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30467
(635 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.) 134 6e-32
SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0) 74 8e-14
SB_29195| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.78
SB_48987| Best HMM Match : Ank (HMM E-Value=2.7e-36) 29 2.4
SB_28048| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_5367| Best HMM Match : wnt (HMM E-Value=0) 29 4.2
SB_45399| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_5714| Best HMM Match : CBM_X (HMM E-Value=1.9) 27 9.7
>SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1137
Score = 134 bits (324), Expect = 6e-32
Identities = 61/92 (66%), Positives = 71/92 (77%), Gaps = 1/92 (1%)
Frame = +3
Query: 84 VFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDARFYALSRK 263
V F EKF D SWE WV S G + GKFK TAGKF+ D E DKG++TSEDA+FY +S K
Sbjct: 756 VHFLEKFEDKSWEDRWVSSTSKGAQQGKFKWTAGKFYGDAEADKGIQTSEDAKFYGISAK 815
Query: 264 F-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLK 356
F KPF+NEGK LV+QF+VKHEQ+IDCGGGY K
Sbjct: 816 FEKPFTNEGKTLVIQFSVKHEQNIDCGGGYAK 847
Score = 81.8 bits (193), Expect = 4e-16
Identities = 39/63 (61%), Positives = 46/63 (73%)
Frame = +3
Query: 447 KKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWD 626
K + + FS K + ++ KDD THLYTLIV+PDNTYEV IDNEKVESG+LE DWD
Sbjct: 825 KTLVIQFSVKHEQNIDCGGGYAKDDEMTHLYTLIVRPDNTYEVKIDNEKVESGELEKDWD 884
Query: 627 FLP 635
FLP
Sbjct: 885 FLP 887
>SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0)
Length = 1086
Score = 74.1 bits (174), Expect = 8e-14
Identities = 43/95 (45%), Positives = 54/95 (56%), Gaps = 10/95 (10%)
Frame = +3
Query: 366 CKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKG-KNHLIKKDIRCK--------- 515
C L Q+ +TPY IMFGPD CG +K+H IF +K KN I++ K
Sbjct: 28 CHLFQESFGDKTPYTIMFGPDKCGED-RKLHFIFRHKNPKNGTIEEKHAKKPTGNYNSVF 86
Query: 516 DDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEAD 620
D THL+TL+V+PDNT+EV ID E V G L D
Sbjct: 87 DGKKTHLFTLVVRPDNTFEVFIDQESVNKGSLLED 121
>SB_29195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 39.9 bits (89), Expect = 0.002
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Frame = -2
Query: 343 PPQSMSCSCLTVNWTTKGLPSLLNG---LNLRERA*NLASSEVFKPLSSSGSLKNFPAVN 173
P + SC CL V W T GLP L++G L R L+ + P S SL + V
Sbjct: 429 PSEQNSCQCLFVGWQTVGLPQLIHGTVALISFRRKRTLSGGSL--PRGRSRSLSS-DRVG 485
Query: 172 LNFPNSFPGCSLYTQLLSHESSGNFSSKNTSQFIEDNA 59
P++ G + + S+G+ S+ +SQ D A
Sbjct: 486 TRLPSARKGSASKIGIPRTSSTGSLGSRRSSQSSTDGA 523
>SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3669
Score = 31.1 bits (67), Expect = 0.78
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -2
Query: 304 WTTKGLPSLLNGLNLRERA*NLASSEVFKPLSSSGSLKNF 185
+TT+GLPS ++ +NL E NL S KP S + ++
Sbjct: 959 YTTQGLPSKISSVNLTEALSNLISISWSKPSDGSSLITDY 998
>SB_48987| Best HMM Match : Ank (HMM E-Value=2.7e-36)
Length = 551
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +3
Query: 501 DIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWD 626
D+ CKDD V D T E L+D+ +V+S L D D
Sbjct: 485 DVSCKDDKNRTALHWAVGQDKTIEGLLDDPRVQSLQLVNDQD 526
>SB_28048| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 125
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = -1
Query: 146 VLTVHPIAFPRIIRKLLLKEYI 81
+LT H + P++IRK+ LK+Y+
Sbjct: 73 LLTAHLVVAPKLIRKMPLKDYV 94
>SB_5367| Best HMM Match : wnt (HMM E-Value=0)
Length = 367
Score = 28.7 bits (61), Expect = 4.2
Identities = 9/33 (27%), Positives = 17/33 (51%)
Frame = -3
Query: 606 RQIQLSHCQ*GLHRCCQVSQSECTNVCRHHLCS 508
+++Q + C+ H CC+V C H+C+
Sbjct: 335 KEVQATRCRCKFHWCCKVKCKTCIKNVTTHICN 367
>SB_45399| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 573
Score = 28.3 bits (60), Expect = 5.5
Identities = 22/97 (22%), Positives = 35/97 (36%), Gaps = 2/97 (2%)
Frame = -1
Query: 590 LIVNEDFIGVVRFHNQSVQMCVDIIFAADIFFDEMVLTL--VTEDYVYLLGSRTTNVRAE 417
+ + E F V HN S Q DI+ D+ LTL V L + + +
Sbjct: 50 IFLGETFASYVSVHNDSNQSVKDIVIKTDLQTSSQRLTLSGAANMPVAKLDPQKSYDQVI 109
Query: 416 HNLIWSLSVHVLLLQFAVKDLEVSASTVNVLFMFDSE 306
H+ + L H+L+ + L F F +
Sbjct: 110 HHEVKELGTHILVCAVSYSSLAGEKMYFRKFFKFQDD 146
>SB_5714| Best HMM Match : CBM_X (HMM E-Value=1.9)
Length = 975
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -3
Query: 570 HRCCQVSQSECTNVC 526
HRCC+ S S TNVC
Sbjct: 138 HRCCETSPSWKTNVC 152
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,093,994
Number of Sequences: 59808
Number of extensions: 494905
Number of successful extensions: 1208
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1202
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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