Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30466
         (562 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_02_0033 + 12075384-12075869                                         28   5.9  
05_04_0116 + 18131510-18133192                                         28   5.9  
02_05_0046 - 25398412-25398594,25399022-25399060,25399896-254003...    28   5.9  
02_04_0287 + 21600047-21600478                                         28   5.9  

>07_02_0033 + 12075384-12075869
          Length = 161

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 16/26 (61%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = -1

Query: 100 TPSVGRVSGSWRHLRCRFPWA--PVT 29
           T +VG VSGSW  LR RF  A  PVT
Sbjct: 94  TSTVGCVSGSWEKLRDRFCLAFFPVT 119


>05_04_0116 + 18131510-18133192
          Length = 560

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
 Frame = +3

Query: 42  HGNLQRKCRQLPDTRPTDGVVIQKSTGQLTLRYSVAHHKL--VYEKYMSETVISLLAKRN 215
           HG+L+R    L  +RP D      S  ++      A  ++   + + M+  VI      +
Sbjct: 155 HGHLRRCAEALAASRPADADAELASIARMASSDGDAVQRVAAAFAEAMARVVIRPWRGVS 214

Query: 216 SARFPRDGSVVGTRLTS 266
           +A FP D    G  LT+
Sbjct: 215 AALFPSDAGAAGDALTA 231


>02_05_0046 - 25398412-25398594,25399022-25399060,25399896-25400360,
            25400758-25400816,25400920-25401748,25402554-25402898,
            25402973-25403435,25403537-25403640,25403692-25403901,
            25404933-25405088,25405774-25406052,25406237-25406986,
            25407141-25407232,25407977-25408361,25408672-25408752,
            25409196-25409354,25409399-25409506,25409604-25409666,
            25409764-25409835,25409932-25410366
          Length = 1758

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 305  PSHLPTSLLEERCLRPKNCHSFLFANVKRRFL 400
            P+ L + L ++RC  P  C+   FAN    FL
Sbjct: 1726 PTLLQSILKQDRCKEPSKCNKRYFANPMSTFL 1757


>02_04_0287 + 21600047-21600478
          Length = 143

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 300 HAPPSAKLCRSTRLAEFRRRCHLSGIVLN 214
           HAP SA+ CR  R A  RR  H   + +N
Sbjct: 73  HAPASARRCRRCRRALERREPHWPDLAVN 101


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,384,715
Number of Sequences: 37544
Number of extensions: 283596
Number of successful extensions: 681
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)