Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30466
         (562 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37350| Best HMM Match : MFS_1 (HMM E-Value=4.9e-07)                 31   0.85 
SB_24296| Best HMM Match : Pox_A32 (HMM E-Value=1)                     29   2.6  
SB_59454| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_42340| Best HMM Match : DnaJ (HMM E-Value=3.2e-32)                  28   6.0  
SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)                    28   6.0  

>SB_37350| Best HMM Match : MFS_1 (HMM E-Value=4.9e-07)
          Length = 349

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = +2

Query: 365 SFLFAN---VKRRFLNCSKTTNVIGVLNISLSSITLLAPTMSDDDVN 496
           SFLFA    V   FLNCS+    + +L +S  S+ L APT S + V+
Sbjct: 268 SFLFAATLLVPVGFLNCSQQNISVLLLTLSCGSLGLYAPTGSANSVD 314


>SB_24296| Best HMM Match : Pox_A32 (HMM E-Value=1)
          Length = 1041

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
 Frame = +2

Query: 272 RQSLADGGAWTPSHLPTSLLEERCLRPKNCHSF----LFANVKRRFLNCSKT 415
           RQS+ +         P      RCL P  CH F     FA  +RR  +C+ T
Sbjct: 170 RQSMGNSKGANTFSAPVDDALSRCLEPPECHIFSGVGSFARRRRRPASCANT 221


>SB_59454| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 285

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = +3

Query: 138 YSVAHHKLVYEKYMSETVISLLAKRNSARFPRDGSVVGTRLTSCYDRA--*LMEARGRHH 311
           ++  H++  YE Y     I    K  +A+   + +VVG++L    D+A     +A    H
Sbjct: 44  FTGGHYQKAYELYTEALEIDPKNKSTNAKLYYNRAVVGSKLGK-NDQAIEDCTQAMNLDH 102

Query: 312 TYQPAFLK 335
           TY  A+LK
Sbjct: 103 TYTKAYLK 110


>SB_42340| Best HMM Match : DnaJ (HMM E-Value=3.2e-32)
          Length = 264

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = +3

Query: 138 YSVAHHKLVYEKYMSETVISLLAKRNSARFPRDGSVVGTRLTSCYDRA--*LMEARGRHH 311
           ++  H++  YE Y     I    K  +A+   + +VVG++L    D+A     +A    H
Sbjct: 44  FTGGHYQKAYELYTEALEIDPKNKSTNAKLYYNRAVVGSKLGK-NDQAIEDCTQAMNLDH 102

Query: 312 TYQPAFLK 335
           TY  A+LK
Sbjct: 103 TYTKAYLK 110


>SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)
          Length = 1120

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = -2

Query: 420  FVVLEQFRNLLLTLANKNE*QFLGRRHRSSRRLVGKCDGVHAPPSAKLCRST 265
            FV+ E+++N+L   +  NE     R+   ++RL+  C   H P   ++C +T
Sbjct: 872  FVIFERYQNILTFTSGWNEATPHCRQVTVTQRLIFTC---HGPHHCRVCHAT 920


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,417,246
Number of Sequences: 59808
Number of extensions: 318724
Number of successful extensions: 948
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)