Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30466
         (562 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58743-2|AAB00614.1|  298|Caenorhabditis elegans Hypothetical pr...    32   0.25 
Z68119-5|CAA92196.1|  102|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z81048-1|CAB02839.1|  587|Caenorhabditis elegans Hypothetical pr...    28   5.3  
AB033380-1|BAA92264.1|  587|Caenorhabditis elegans kinesin like ...    28   5.3  
Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U53154-3|AAC25852.1|  346|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>U58743-2|AAB00614.1|  298|Caenorhabditis elegans Hypothetical
           protein F39F10.2 protein.
          Length = 298

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = -2

Query: 510 RETTLLTSSSDIVGANKVIELREILSTPITFVVLEQFRNLLLTLANKNE 364
           RET  LT+ SD+ G  K+ E     +    ++V+EQ  + L+T+  +NE
Sbjct: 55  RETFTLTALSDVSGVTKMFEYGS--TETHNWIVMEQLSDDLITIVRRNE 101


>Z68119-5|CAA92196.1|  102|Caenorhabditis elegans Hypothetical
           protein T18D3.7 protein.
          Length = 102

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = -2

Query: 498 LLTSSSDIVGA--NKVIELREILSTPITFVVLEQFRNLLLTLAN 373
           L T++S+ V A  NK+++  +++ T +TF V E+   L  T+ +
Sbjct: 24  LATATSNTVVAIDNKIVQAMDLVKTHLTFAVREEVETLRTTITD 67


>Z81048-1|CAB02839.1|  587|Caenorhabditis elegans Hypothetical
           protein C41G7.2 protein.
          Length = 587

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 18/51 (35%), Positives = 29/51 (56%)
 Frame = +3

Query: 66  RQLPDTRPTDGVVIQKSTGQLTLRYSVAHHKLVYEKYMSETVISLLAKRNS 218
           RQL   RP      Q+ST   +L+ SVA  + V +K +  + ++LL +RN+
Sbjct: 110 RQLRTGRPPPPST-QRSTATFSLKPSVARARPVAQKPILPSKVTLLEERNA 159


>AB033380-1|BAA92264.1|  587|Caenorhabditis elegans kinesin like
           protein protein.
          Length = 587

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 18/51 (35%), Positives = 29/51 (56%)
 Frame = +3

Query: 66  RQLPDTRPTDGVVIQKSTGQLTLRYSVAHHKLVYEKYMSETVISLLAKRNS 218
           RQL   RP      Q+ST   +L+ SVA  + V +K +  + ++LL +RN+
Sbjct: 110 RQLRTGRPPPPST-QRSTATFSLKPSVARARPVAQKPILPSKVTLLEERNA 159


>Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical
           protein B0365.7 protein.
          Length = 2769

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -2

Query: 498 LLTSSSDIVGANKVIELREILSTPITFVVLEQFRNLLLTLANKN 367
           LLT+  ++     +   + ILS+P  F +L+  R+ L TL N N
Sbjct: 779 LLTTELNVQMQAHLARSQTILSSPHAFSILDHIRHWLDTLLNLN 822


>Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical
           protein B0365.7 protein.
          Length = 2769

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -2

Query: 498 LLTSSSDIVGANKVIELREILSTPITFVVLEQFRNLLLTLANKN 367
           LLT+  ++     +   + ILS+P  F +L+  R+ L TL N N
Sbjct: 779 LLTTELNVQMQAHLARSQTILSSPHAFSILDHIRHWLDTLLNLN 822


>U53154-3|AAC25852.1|  346|Caenorhabditis elegans Hypothetical
           protein C33G8.8 protein.
          Length = 346

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 348 RRHRSSRRLVGKCDGVHAPPSAKLCRSTRL 259
           RR+  S++LV +C  +H  PS+  CR  R+
Sbjct: 28  RRYVHSQKLVIECTCLHRLPSSHPCRHCRM 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,121,428
Number of Sequences: 27780
Number of extensions: 237188
Number of successful extensions: 496
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)