Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30465
         (671 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13050.1 68416.m01626 transporter-related low similarity to a...    59   2e-09
At3g17900.1 68416.m02280 expressed protein                             31   0.92 
At2g40730.1 68415.m05024 HEAT repeat-containing protein contains...    30   1.6  
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein...    29   2.1  
At5g41310.1 68418.m05020 kinesin motor protein-related                 28   4.9  
At4g09670.1 68417.m01588 oxidoreductase family protein similar t...    28   4.9  
At3g02060.1 68416.m00169 DEAD/DEAH box helicase, putative simila...    28   4.9  
At1g69690.1 68414.m08020 TCP family transcription factor, putati...    28   4.9  
At5g42390.1 68418.m05161 metalloendopeptidase identical to chlor...    27   8.6  
At5g25000.1 68418.m02963 hypothetical protein                          27   8.6  
At1g04300.1 68414.m00421 meprin and TRAF homology domain-contain...    27   8.6  

>At3g13050.1 68416.m01626 transporter-related low similarity to
           apical organic cation transporter [Sus scrofa]
           GI:2062135, SP|Q02563 Synaptic vesicle protein 2 (SV2)
           {Rattus norvegicus}; contains Pfam profile PF00083:
           major facilitator superfamily protein
          Length = 500

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 23/71 (32%), Positives = 46/71 (64%)
 Frame = +1

Query: 382 ERAIELTGYGRFHYMLLAVCGLVSTSEEMDVISMSFILPSAQCDLDLTTQTKGWLNSIIF 561
           + A+   G+G+F   +LA  G+   +E M+++ +SF+ P+ Q   +L+ + +  + S++F
Sbjct: 11  DEALVAMGFGKFQIYVLAYAGMGWVAEAMEMMLLSFVGPAVQSLWNLSARQESLITSVVF 70

Query: 562 IGMMVGAYAWG 594
            GM++GAY+WG
Sbjct: 71  AGMLIGAYSWG 81


>At3g17900.1 68416.m02280 expressed protein
          Length = 838

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
 Frame = +3

Query: 81  LTNNKEEAHRIVTGKLYAVGSATPPSERRLSVPATTIQSRPPA---*DGRN*PGAQESSQ 251
           LT  K E H  +    ++VGS   PS  R  + ++++ S P       G    G Q +  
Sbjct: 558 LTLRKGEEHSFIVKPAFSVGSNLKPSAARNKLKSSSL-SLPTVNFERKGSGLSGDQYAVM 616

Query: 252 L*CKRGSTTKRPRFQNRRAWRRTFS*EIEI 341
           + C+   T  R  F+ R  WR   S ++ I
Sbjct: 617 VSCRCNYTESRLFFKQRTKWRPRVSRDLMI 646


>At2g40730.1 68415.m05024 HEAT repeat-containing protein contains
           INTERPRO:IPR000357 HEAT repeat
          Length = 798

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -3

Query: 669 ATMASAFTMEMAMSTRLRPSESATEPPSVRAHHHT--DEDYTV*PS 538
           A +AS+ +     +     + +ATE PSV+A HHT  + D+T  P+
Sbjct: 598 APLASSSSAPSLAAAASNATSTATEAPSVKASHHTRSNSDFTDQPA 643


>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 551

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +2

Query: 29  SSPHLTRTVHSHLKWRNAHKQQGRSTSDRHRQAIRCW*RHSPQ*ETFECPRDHHTKPP 202
           S+PH +       K +  HK++   TS R R+    W    P+ E+F+  +    K P
Sbjct: 403 STPHESNGKTKKKKKKKTHKEEQPQTSPRKRKHRGGWITEEPEEESFQRGKMRRPKSP 460


>At5g41310.1 68418.m05020 kinesin motor protein-related 
          Length = 961

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 46  PHRS*PPEVAERSQTTRKKHIGSSPA 123
           P  S PPE+ E+S+   K H+G  P+
Sbjct: 888 PETSNPPEMFEQSEQNDKAHVGVGPS 913


>At4g09670.1 68417.m01588 oxidoreductase family protein similar to
           AX110P [Daucus carota] GI:285739; contains Pfam profiles
           PF01408: Oxidoreductase family NAD-binding Rossmann
           fold, PF02894: Oxidoreductase family C-terminal
           alpha/beta domain
          Length = 362

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 487 FILPSAQCDLDLTTQTKGWLNSII 558
           FI+P  + +   TT TK W N ++
Sbjct: 265 FIIPYKETEASFTTSTKAWFNDLV 288


>At3g02060.1 68416.m00169 DEAD/DEAH box helicase, putative similar
           to C-terminal half of transcription-repair coupling
           factor (TRCF) GB:Q55750 [Synechocystis PCC6803];
           contains Pfam profile: helicases conserved C-terminal
           domain
          Length = 823

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 1/97 (1%)
 Frame = +1

Query: 229 PGPKNPHNCDVKGDLQLNGPGSKTAELGVVPSVKKSKSDPEKGSNSEKADFERAI-ELTG 405
           P PKNP   D       N            P  K++  D EK     +   +R I    G
Sbjct: 252 PYPKNPIMADFAAQFPYNA----------TPDQKQAFLDVEKDLTERETPMDRLICGDVG 301

Query: 406 YGRFHYMLLAVCGLVSTSEEMDVISMSFILPSAQCDL 516
           +G+    L A+  +VST ++  V++ + +L     D+
Sbjct: 302 FGKTEVALRAIFCVVSTGKQAMVLAPTIVLAKQHYDV 338


>At1g69690.1 68414.m08020 TCP family transcription factor, putative
           similar to PCF1 (GI:2580438) and PCF2 [(GI:2580440)
           Oryza sativa]
          Length = 325

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/63 (22%), Positives = 28/63 (44%)
 Frame = +1

Query: 226 DPGPKNPHNCDVKGDLQLNGPGSKTAELGVVPSVKKSKSDPEKGSNSEKADFERAIELTG 405
           DP P + H  +    L  +   S +  L ++ +  +  S+P+K      +  +R  ++ G
Sbjct: 2   DPDPDHNHRPNFPLQLLDSSTSSSSTSLAIISTTSEPNSEPKKPPPKRTSTKDRHTKVEG 61

Query: 406 YGR 414
            GR
Sbjct: 62  RGR 64


>At5g42390.1 68418.m05161 metalloendopeptidase identical to
           chloroplast processing enzyme metalloendopeptidase
           [Arabidopsis thaliana] gi|2827039|gb|AAC39482
          Length = 1265

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +3

Query: 72  GGTLTNNKE---EAHRIVTGKLYAVGSATPPSERRLSVPATTIQSRPP 206
           GGT +N K    +  +++  + +A+    PP E   S+P T++  +PP
Sbjct: 436 GGTFSNEKTNTADQSKMIKRERHAI---RPPVEHNWSLPGTSVDLKPP 480


>At5g25000.1 68418.m02963 hypothetical protein 
          Length = 121

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = -1

Query: 497 GRMNDIEMTSISSEVLTRPHTANSM*WKRPYPVSSIARSKSAFSELEPFSGSDFD 333
           G +N+ E  ++   +L   +  + + WKR YP+  +   K    E+E  S +D D
Sbjct: 59  GDLNEEEDDNVLMHLLKNNYVFSELDWKRGYPL--LQHQKDEEIEIEDKSNADAD 111


>At1g04300.1 68414.m00421 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471;contains Pfam PF00917: Meprin And
           TRAF-Homology (MATH) domain
          Length = 1052

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/65 (27%), Positives = 28/65 (43%)
 Frame = -2

Query: 388 PVRSRLFPNWSPSPDRISIS*LKVRRQARRFWNLGRLVVDPLLHHNCEDSWAPGQFLPSY 209
           P  + + P   PSP  +S S        R   + GRL  DP LH+  + ++ P  +  + 
Sbjct: 764 PSSAPIIPAMRPSPITVSSSVQTTTSLPRSVSSAGRLGPDPSLHN--QQTYTPQSYKNAI 821

Query: 208 AGGRL 194
            G  L
Sbjct: 822 VGNSL 826


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,850,296
Number of Sequences: 28952
Number of extensions: 361219
Number of successful extensions: 1027
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)