Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30464
         (478 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.11 |atp17||F0 ATPase subunit F|Schizosaccharomyces pomb...    31   0.091
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    27   1.5  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   4.5  
SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|ch...    25   4.5  
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    25   5.9  
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch...    25   5.9  
SPCC61.05 |||S. pombe specific multicopy membrane protein family...    25   7.9  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    25   7.9  

>SPBC1604.11 |atp17||F0 ATPase subunit F|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 96

 Score = 31.1 bits (67), Expect = 0.091
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = +2

Query: 107 SQLKLNEIGSWFGRRSKTPSAVAGAFSRAWWRWQHKYVQPKKVGMAPFYQLLVGSMVFFY 286
           S  ++  I  ++ R    P+      S +++ W +K    K    AP   L+   +VF Y
Sbjct: 25  SSARMGRIVDFYSRLPHGPAPKKS--SNSFFSWYYKKYLGKNASGAPLLHLVGAVLVFSY 82

Query: 287 AIN-YGRIKHHKNY 325
           A   Y  I+HH+ +
Sbjct: 83  ASEYYYHIRHHEEH 96


>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -3

Query: 305 FFHS*WHRRRPCCQRVVDRMEPCQPS*VVHTYVAISTRLD 186
           F+ S  H+ R    R ++RME C    ++  Y+   T LD
Sbjct: 27  FYWSQIHKVRKLVDRSIERMESCSIINIITKYIIEQTDLD 66


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
           EF hand and WH2 motif |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1794

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
 Frame = +2

Query: 62  PYDPARYYGKPDTPFSQLK-LNEIGSWFGRRSKTPSAVAGAFSRAWWRWQHKYVQPKKVG 238
           PY P  Y G    PF Q +   +  + FG  S+   +VA    +    + +  + P+ + 
Sbjct: 48  PYQPDGYAGNTMLPFQQSQPATQFNNGFGYASQPTGSVADYGQQQQQMYGYNGMMPQTMN 107

Query: 239 MAPFYQ 256
              F Q
Sbjct: 108 NTGFMQ 113


>SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 234

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -1

Query: 184 ESSGHGRRSLAAATEPRTDFVQLQLAEWSIRFSIVACRIVRPMY 53
           ESS HG  SL  A +P T  V   L  W+ +F+    R+    Y
Sbjct: 24  ESSAHGDASLGQADKPLTVDV---LDAWTTQFTKKQTRVFHEAY 64


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 390 NKTDYILIHTATGTESVL*WY 328
           N  D I +H  T  ESV+ WY
Sbjct: 473 NNIDRISLHVQTTNESVIKWY 493


>SPBC9B6.11c |||CCR4/nocturin family
           endoribonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 502

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 22/78 (28%), Positives = 33/78 (42%)
 Frame = -3

Query: 269 CQRVVDRMEPCQPS*VVHTYVAISTRLD*KLRPRQTESCCGDRTTNRFRSASTG*MEYQV 90
           CQR  D +E          YV   + L+ K    +TE+   +      +S+ST  +    
Sbjct: 320 CQRATDIIERSM------NYVFGESELEEKNASTKTENDSNEDDKEECQSSSTSSVPEST 373

Query: 89  FHSSVQDRKAHVQQDYTP 36
             S+ + R  HVQ DY P
Sbjct: 374 A-STPKKRILHVQNDYVP 390


>SPCC61.05 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 469

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 159 LRLPWPELSVEPGGD 203
           +R+PWP L+VE  GD
Sbjct: 174 IRIPWPVLTVEFYGD 188


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 5   SKNMAFGDYPKEYNPAVHGPYDPARYYGKPD 97
           S+N A+G  P+ Y P    P  P  Y  +P+
Sbjct: 91  SQNRAYGAAPQPYPPQGGYPQQPYYYPNQPN 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,066,696
Number of Sequences: 5004
Number of extensions: 40534
Number of successful extensions: 98
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)