Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30464
         (478 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0058 + 438000-438230,438847-438902,440003-440117,440314-44...    30   0.84 
09_04_0385 + 17167174-17167440,17173321-17173962                       30   0.84 
02_05_0516 + 29694631-29695182                                         30   0.84 
12_02_0792 - 23191120-23191313,23191419-23191775,23192027-231921...    27   5.9  
10_05_0011 - 7822847-7822880,7823653-7823754,7823859-7824106,782...    27   7.8  
06_03_0914 + 25920277-25920405,25920783-25920810,25920890-259209...    27   7.8  
04_04_1565 - 34451411-34451875,34454077-34455249,34455340-34455402     27   7.8  
01_06_0208 - 27540077-27540992,27541310-27541497                       27   7.8  

>11_01_0058 +
           438000-438230,438847-438902,440003-440117,440314-440424,
           442331-442518,442957-443013,443109-443268,443368-443436,
           443580-443699
          Length = 368

 Score = 30.3 bits (65), Expect = 0.84
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +2

Query: 23  GDYPKEYNPAVHGPYDPARYYGKPDTPFSQLKLNEIGSWFGRRSKTPSAVAGA 181
           GD+   Y P     Y P  Y+G+P  P + L+   +G        TPS V  A
Sbjct: 15  GDHYPYYKPTSRPHYQPPHYHGQPAAPPAPLQQQHLGP----HGVTPSTVGVA 63


>09_04_0385 + 17167174-17167440,17173321-17173962
          Length = 302

 Score = 30.3 bits (65), Expect = 0.84
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -1

Query: 208 LPSPPGSTESSGHGRRSLAAATEPRTD 128
           LP  P +T SSG+ R S +A++ PR D
Sbjct: 146 LPPEPSATTSSGNDRSSSSASSPPRAD 172


>02_05_0516 + 29694631-29695182
          Length = 183

 Score = 30.3 bits (65), Expect = 0.84
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = +2

Query: 137 WFGRRSKT-PS--AVAGAFSRAWWRWQHKYVQPKKVGMA 244
           W  RRSK+ PS  A AG   + WW W   ++  KK G A
Sbjct: 67  WAFRRSKSAPSLGAFAGGPLKRWWDWGVGWLMSKKPGFA 105


>12_02_0792 -
           23191120-23191313,23191419-23191775,23192027-23192108,
           23192186-23193097,23193190-23193346,23193540-23193694,
           23194667-23194819,23195334-23195627,23195711-23195896,
           23196062-23196662,23196868-23196992,23197101-23197197,
           23197299-23197411,23198129-23198233
          Length = 1176

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 17/62 (27%), Positives = 26/62 (41%)
 Frame = +2

Query: 53  VHGPYDPARYYGKPDTPFSQLKLNEIGSWFGRRSKTPSAVAGAFSRAWWRWQHKYVQPKK 232
           +HG         KPD P   L LN+ GS+    SK     +   + AWW + ++  +   
Sbjct: 633 LHGASSTIIKNHKPDNPIPPLTLNQAGSFTVCHSKAWD--SKIVTSAWWVYPYQVSKTAP 690

Query: 233 VG 238
            G
Sbjct: 691 TG 692


>10_05_0011 -
           7822847-7822880,7823653-7823754,7823859-7824106,
           7824195-7824240,7824368-7825984,7826673-7826797,
           7826915-7829083
          Length = 1446

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = -1

Query: 208 LPSPPGSTESSGHGRRS 158
           LPS PGST SSG+  RS
Sbjct: 847 LPSTPGSTTSSGYPSRS 863


>06_03_0914 +
           25920277-25920405,25920783-25920810,25920890-25920990,
           25921356-25921479,25921793-25921903,25922222-25922397,
           25922766-25922848,25922935-25923007,25923630-25923695,
           25923776-25923818,25924600-25924739,25924878-25925090,
           25925397-25925481,25925558-25925852,25926855-25927110,
           25927237-25927450,25927701-25927912,25928054-25928203
          Length = 832

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 132 VRGSVAAARLRLPWPELSVEPGGDGNISMYNLRRLAWLHSI 254
           +RG+V A   R     L    G  G IS++NL +   LHS+
Sbjct: 153 IRGAVTALSFRTDGQPLLASGGSSGVISIWNLEKRR-LHSV 192


>04_04_1565 - 34451411-34451875,34454077-34455249,34455340-34455402
          Length = 566

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = +2

Query: 86  GKPDTPFSQLKLNEIGSWFGRRS--KTPSAVAGAFSRAWW 199
           G P+   S    +     FGR S  KTP ++   F+R WW
Sbjct: 169 GTPNRSSSSCSSSPDTLGFGRSSSTKTPESMKPCFAREWW 208


>01_06_0208 - 27540077-27540992,27541310-27541497
          Length = 367

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 155 KTPSAVAGAFSRAWWRW 205
           + P   AG+F   WWRW
Sbjct: 275 RAPPLSAGSFLTGWWRW 291


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,062,177
Number of Sequences: 37544
Number of extensions: 283984
Number of successful extensions: 900
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)