Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30464
         (478 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31829| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   6e-04
SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045)            31   0.64 
SB_1793| Best HMM Match : RVT_1 (HMM E-Value=0)                        29   2.0  
SB_16501| Best HMM Match : Fork_head (HMM E-Value=3.3e-29)             28   3.4  
SB_29112| Best HMM Match : Mucin (HMM E-Value=1.7)                     27   6.0  
SB_28918| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_45684| Best HMM Match : T-box (HMM E-Value=1.5e-32)                 27   7.9  

>SB_31829| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 72

 Score = 40.7 bits (91), Expect = 6e-04
 Identities = 22/71 (30%), Positives = 32/71 (45%)
 Frame = +2

Query: 98  TPFSQLKLNEIGSWFGRRSKTPSAVAGAFSRAWWRWQHKYVQPKKVGMAPFYQLLVGSMV 277
           T F + KL   G +  R +   +   G  SR W  ++ KYV  K   M PF+  +  +  
Sbjct: 2   TSFGETKLKNAGDYVVRNASLENMWRG-MSRVWNSYRAKYVTCKNARMTPFWHAVFVAAA 60

Query: 278 FFYAINYGRIK 310
             YAI Y  +K
Sbjct: 61  LNYAIEYNHLK 71


>SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045)
          Length = 1050

 Score = 30.7 bits (66), Expect = 0.64
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 134 SWFGRRSKTPSAVAGAFSRAWWRWQHKYV 220
           SW  RRS   S     FS  +WRW H++V
Sbjct: 489 SW-SRRSAATSLDTKTFSIEYWRWHHRFV 516


>SB_1793| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 864

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +2

Query: 146 RRSKTPSAVAGAFSRAWWRWQHKYVQPKKVGMAPFY 253
           RRS   S     FS  +WRW H++       +  FY
Sbjct: 785 RRSAATSLDTKTFSIEYWRWHHRFYSGSTATIRIFY 820


>SB_16501| Best HMM Match : Fork_head (HMM E-Value=3.3e-29)
          Length = 594

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +2

Query: 95  DTPFSQLKLNEIGSWFGR 148
           D+P +QL LNEI SWF R
Sbjct: 423 DSPDTQLTLNEIYSWFTR 440


>SB_29112| Best HMM Match : Mucin (HMM E-Value=1.7)
          Length = 493

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 5   SKNMAFGDYPKEYNPAVH-GPYDPARYYGKPDTPFSQLKLNEIGS 136
           SK +  G +PK  NPA H  P +PA  + KP  P +  K    G+
Sbjct: 246 SKALETGTHPKPTNPATHPKPTNPAT-HPKPTNPGTNPKPTNPGT 289


>SB_28918| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 319

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 248 FYQLLVGSMVFFYAINYGRIKHHKNYKYH*R 340
           F+ L    M FFY   Y +I+HHK    H R
Sbjct: 184 FFVLPFALMCFFYLKIYLKIRHHKKQTAHMR 214


>SB_45684| Best HMM Match : T-box (HMM E-Value=1.5e-32)
          Length = 337

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +2

Query: 62  PYDPARYYGKPDTPFSQLKLNEIGSWFGRRSKTPSAVAGAFSRAWW 199
           P  P R Y  PD+PF+  +L    S   R+S +P+      +  +W
Sbjct: 259 PPAPVRLYMHPDSPFTGEQLLNRSS-RSRKSSSPTTTQTTMATIYW 303


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,764,474
Number of Sequences: 59808
Number of extensions: 316911
Number of successful extensions: 695
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 989515521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)