Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30462
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    28   1.6  
SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   6.6  

>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 429 FGNMYYLFNIRTCRTRVLFYV*INLCEIH 515
           FGN+Y+L  ++    R L+YV ++  EI+
Sbjct: 432 FGNVYFLATLKDSTERHLYYVSLDTLEIY 460


>SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 287

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +1

Query: 148 F*CLRTARRY*HRANRDHACA*NLPQNVSKMFKLKLYFIC 267
           F CL  + R  H+  R+H  +  LP N++  F +    +C
Sbjct: 173 FSCLNHSPRQIHKTVRNHLFSPPLPSNLALSFSISNASVC 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,050,147
Number of Sequences: 5004
Number of extensions: 62708
Number of successful extensions: 105
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)