Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30462
         (747 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0632 - 20112297-20116562                                         30   2.2  
06_01_0192 - 1485444-1485491,1485582-1485648,1485780-1485890,148...    28   6.9  

>07_03_0632 - 20112297-20116562
          Length = 1421

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 650 IFENWWF*IAICLFLVSAIDNRGLCKHYFRAY 745
           + E+WW+ ++ C F +  I + G+C     AY
Sbjct: 445 VLESWWWNVSSCSFDIHIISSFGICHSELPAY 476


>06_01_0192 -
           1485444-1485491,1485582-1485648,1485780-1485890,
           1486278-1486343,1486814-1486878,1486952-1487014,
           1487215-1487337,1487777-1487887,1488030-1488148,
           1488721-1488806,1488918-1489267
          Length = 402

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = -2

Query: 215 FYAQAWSRFARC*YLLAVLRHQKCLLIIYRAVKGYLV*ATFILFFYCFVGWTSSQPT 45
           +YAQA +      + L  LR  K L        G++  A   LF+Y   GW   +PT
Sbjct: 339 YYAQATAAQEIFGHTLQSLRGIKYLYKYNVFQYGFVALAILTLFYYAIFGWRKRKPT 395


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,628,824
Number of Sequences: 37544
Number of extensions: 355082
Number of successful extensions: 559
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)