Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30462
         (747 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    24   1.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.0  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   5.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.3  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 226 NVSKMFKLKLYFICDF 273
           + S +++LKLY  CD+
Sbjct: 33  STSALYRLKLYLFCDY 48


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = -2

Query: 248  SLNILLTF*GRFYAQAWSRFARC*YLLAVLRHQKCLLIIYRAVKGY 111
            S  +L+     F    WSRF     L   LR +   LII +A   Y
Sbjct: 1124 SRRVLIVLTRNFLLTEWSRFEFRAALHEALRGRTAQLIIVQAENAY 1169


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 118 KAIWFKRHLSCFFIASLG 65
           KA+W +R L+   + SLG
Sbjct: 587 KAMWLRRALASLMVFSLG 604


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 153 MSKDRKKILTPGE 191
           MS+  KK+L+PGE
Sbjct: 904 MSESSKKVLSPGE 916


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,101
Number of Sequences: 438
Number of extensions: 4497
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)