Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30462
         (747 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g32410.2 68414.m04000 vacuolar protein sorting 55 family prot...    29   4.3  
At1g32410.1 68414.m03999 vacuolar protein sorting 55 family prot...    29   4.3  
At1g19780.1 68414.m02473 cyclic nucleotide-regulated ion channel...    27   10.0 

>At1g32410.2 68414.m04000 vacuolar protein sorting 55 family protein
           / VPS55 family protein contains Pfam domain PF04133:
           Vacuolar protein sorting 55
          Length = 140

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/36 (27%), Positives = 23/36 (63%)
 Frame = +2

Query: 590 IRWLLIRLFEAISVKLA*CAIFENWWF*IAICLFLV 697
           I +L I +   I +++  CA+F NWW  +++ ++++
Sbjct: 17  IAFLAILVSTGIVLQILACALFNNWWPMLSVIMYVL 52


>At1g32410.1 68414.m03999 vacuolar protein sorting 55 family protein
           / VPS55 family protein contains Pfam domain PF04133:
           Vacuolar protein sorting 55
          Length = 140

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/36 (27%), Positives = 23/36 (63%)
 Frame = +2

Query: 590 IRWLLIRLFEAISVKLA*CAIFENWWF*IAICLFLV 697
           I +L I +   I +++  CA+F NWW  +++ ++++
Sbjct: 17  IAFLAILVSTGIVLQILACALFNNWWPMLSVIMYVL 52


>At1g19780.1 68414.m02473 cyclic nucleotide-regulated ion channel,
           putative (CNGC8) similar to cyclic nucleotide and
           calmodulin-regulated ion channel GI:4581207 from
           (Arabidopsis thaliana)
          Length = 728

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -2

Query: 278 FMKSQIKYSLSLNILLTF*GRFYAQAWSRFARC*YLLAVLRH 153
           F+ SQ +   S  +  TF  RFY+Q W  +A C    A  RH
Sbjct: 594 FVASQFRRLHSRQVQQTF--RFYSQQWRTWAACFIQAAWRRH 633


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,495,155
Number of Sequences: 28952
Number of extensions: 305938
Number of successful extensions: 487
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)