Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30461
         (867 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    27   3.5  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    26   6.0  
SPAC1952.15c |rec24|mug6|meiotic recombination protein Rec24|Sch...    26   6.0  

>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 636 TIQYSKPVKKADYATQKDIVEKLAIEQMGE 725
           T+ Y+K   KAD A   D++E+ AIE   E
Sbjct: 687 TMLYNKDTGKADSAWASDLIEEQAIESDDE 716


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = -2

Query: 137 CRHKARSCGSTRTK*PTSRAVNRHRIHLTLFRTVAKSVADKRFDR 3
           CR K   C   R   P S  + R  I   ++    K+  DKRF+R
Sbjct: 26  CRRKKLKCDHGR---PCSNCLKRSTIQSCIYIDPGKTNYDKRFER 67


>SPAC1952.15c |rec24|mug6|meiotic recombination protein
           Rec24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 350

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 7/45 (15%)
 Frame = +2

Query: 35  QPFERALSEYDAYLR-------HETSATSSSLSHNYVPYVGNGLF 148
           +PF + + + D +L         E   TS SL+H  + Y  NGLF
Sbjct: 97  KPFSKKIEDMDIFLLTNVHENLQEKRQTSGSLAHLDIEYTFNGLF 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,343,452
Number of Sequences: 5004
Number of extensions: 71074
Number of successful extensions: 192
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)