Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30461
         (867 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0676 + 26152192-26152367,26152669-26152708,26152857-261529...    29   3.6  
11_06_0294 + 22022630-22024006,22024109-22024234,22024319-220244...    29   6.4  

>11_06_0676 +
           26152192-26152367,26152669-26152708,26152857-26152966,
           26153886-26153934,26154157-26154206,26154606-26155150,
           26155583-26155743,26156231-26156440,26156525-26156690,
           26156765-26156869,26157465-26157760
          Length = 635

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +2

Query: 2   NGQNACQQHFLQPFERALSEYDAYLRHETSATSSSLSHN 118
           N  N   QHFL  F+   +    Y+RHE    S    H+
Sbjct: 523 NNNNDFGQHFLHGFQALTTVNKLYVRHENKTASDCSDHS 561


>11_06_0294 +
           22022630-22024006,22024109-22024234,22024319-22024423,
           22024525-22024659,22024798-22024847,22026487-22026545,
           22026819-22026928,22027941-22028174,22028278-22028377,
           22028699-22028829,22029834-22029914,22029970-22030128
          Length = 888

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 98  SSSLSHNYVPYVGNGLFGLALEHDSHLNIKYRRTLSLPVYYHPLY 232
           + S +HN+ P      FG   E+DSHL      +++ P+  +P+Y
Sbjct: 751 TESNAHNHPPCYFTTAFGYPSENDSHLVSGLLVSIAAPLDINPVY 795


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,336,149
Number of Sequences: 37544
Number of extensions: 409647
Number of successful extensions: 822
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)