Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30461
         (867 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58731| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   0.001
SB_58730| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.92 
SB_38649| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.92 
SB_39444| Best HMM Match : SAC3_GANP (HMM E-Value=0.68)                31   1.2  
SB_22265| Best HMM Match : DUF1019 (HMM E-Value=8)                     31   1.6  
SB_5632| Best HMM Match : XRN_N (HMM E-Value=3.9)                      29   6.5  
SB_58733| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_36580| Best HMM Match : Borrelia_orfA (HMM E-Value=1.6)             28   8.6  

>SB_58731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 738

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 25/78 (32%), Positives = 38/78 (48%)
 Frame = +2

Query: 311 NTGIHISYQYYAHRTIPSLFVQEILINNPSNKPRALKISTPRVSDWPTAVKQTIKLHQGI 490
           N  + I  +YYAHR   +L + EI I N  NK   L +S     ++   VK T   H   
Sbjct: 147 NGSLFIEMRYYAHRERRNLLINEITIKNDLNKEITLDLSN-NYGNFSKDVKLT--QHTVS 203

Query: 491 DTKEYEVVTGMIPVPESE 544
           + +E E+  G + +PE +
Sbjct: 204 EKEELEIAFGKVNIPEEK 221


>SB_58730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1014

 Score = 31.5 bits (68), Expect = 0.92
 Identities = 20/83 (24%), Positives = 35/83 (42%)
 Frame = +2

Query: 299 FQCSNTGIHISYQYYAHRTIPSLFVQEILINNPSNKPRALKISTPRVSDWPTAVKQTIKL 478
           F+       +  + YAHR+   L V EI +NN   +   L ++T R       + + + L
Sbjct: 396 FKADGGTFDVEQRIYAHRSRKHLLVVEISVNNSLQRDVTLTLTTNR-----GGISRDVDL 450

Query: 479 HQGIDTKEYEVVTGMIPVPESEN 547
           ++ +      V  G + V E  N
Sbjct: 451 NETVFKPGLRVAVGKVKVLEESN 473


>SB_38649| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 456

 Score = 31.5 bits (68), Expect = 0.92
 Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
 Frame = +2

Query: 119 YVPYVGNGLFGLALEHDSHLNIKYRRTLSLPVYYHPLY--IVDDYEI-KEFTVADYKNGI 289
           Y+P+VGNG   +A +  + L+I+   T  + + + PL   ++ +  + KE T+ D K G+
Sbjct: 44  YLPFVGNGNVSVAAKKKALLHIR-GATAFMQIPFSPLLNPVLSEAGLPKEATIIDIKEGV 102

Query: 290 VN 295
           V+
Sbjct: 103 VH 104


>SB_39444| Best HMM Match : SAC3_GANP (HMM E-Value=0.68)
          Length = 794

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 21/68 (30%), Positives = 33/68 (48%)
 Frame = +2

Query: 398 SNKPRALKISTPRVSDWPTAVKQTIKLHQGIDTKEYEVVTGMIPVPESENVIAVAVVCRK 577
           + KPRA     P      TA+ Q     + + T    +VT ++ V   ENVI  + +  K
Sbjct: 134 TEKPRATSGYYPGYQSLQTALVQLRSACKNVATS---LVTALLSVTGRENVIIDSKISTK 190

Query: 578 MSNVIQGR 601
            SN+++GR
Sbjct: 191 HSNMLRGR 198


>SB_22265| Best HMM Match : DUF1019 (HMM E-Value=8)
          Length = 230

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 44  ERALSEYDAYLRHETSATSSSLSHNYVPYVGNGL 145
           +R L E  A++R  TSA  SS++  Y+P++   L
Sbjct: 126 DRILQELQAHMRISTSAEKSSINLEYIPHLRQAL 159


>SB_5632| Best HMM Match : XRN_N (HMM E-Value=3.9)
          Length = 766

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +2

Query: 347 HRTI-PSLFVQEILINNPSNKPRALKISTPRVSDWPTAVKQTIKLH 481
           H T  P    +E+L+NN     +   I+T R+  W   +++ + LH
Sbjct: 120 HNTCTPEKIREEVLLNNTCMPGQIRNITTQRLHAWSEMIRKAVLLH 165


>SB_58733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2060

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +3

Query: 597 VGSKDSLDLLIFTTIQYSKPVKKADYATQKDIVEKLAI 710
           +G+  SL  L FT+ +++K  KKA  A Q+D+   L I
Sbjct: 562 LGTFSSLKALSFTSREFNKEGKKAIKAKQEDLATTLQI 599


>SB_36580| Best HMM Match : Borrelia_orfA (HMM E-Value=1.6)
          Length = 364

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 455 AVKQTIKLHQGIDTKEYEVVTGMIPVPE 538
           A K+ I LH+ I    YEVV G+ P  E
Sbjct: 209 AYKKNITLHRAIGKSHYEVVFGIFPHKE 236


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,759,967
Number of Sequences: 59808
Number of extensions: 516267
Number of successful extensions: 1226
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1225
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2479240863
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)