Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30461
         (867 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   1.6  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          22   8.4  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   8.4  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   8.4  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   8.4  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   8.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   8.4  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 570 HTTATAITFSLSGTGIIPVTTSYSLVS 490
           +TTAT  T S  G+G +P + + S VS
Sbjct: 225 YTTATMATTSTPGSGSLPASPADSGVS 251



 Score = 22.2 bits (45), Expect = 6.4
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 244 LRNQRIYCCGLQKWNSKQISVFKYWHSYFLSIL 342
           L   R YC    KW +++  VFK   S  +S L
Sbjct: 467 LLQDREYCPRYIKWTNRERGVFKLVDSKAVSRL 499


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 397 WIVYQYFLHKQ*WYRP 350
           W+VY     K+ W RP
Sbjct: 35  WVVYNNIKRKRSWSRP 50


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -1

Query: 678 LHNQPS*PVCCIEWL*K 628
           LH QP    CC  WL K
Sbjct: 391 LHMQPRKKNCCRSWLSK 407


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -1

Query: 678 LHNQPS*PVCCIEWL*K 628
           LH QP    CC  WL K
Sbjct: 391 LHMQPRKKNCCRSWLSK 407


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 397 WIVYQYFLHKQ*WYRP 350
           W+VY     K+ W RP
Sbjct: 156 WVVYNNIKRKRSWSRP 171


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -3

Query: 607 LDPTLDYITHFSAHNSYGNNILTFRYWYHSCHN 509
           LDP L  +  F+  +   N  +TF Y   S  N
Sbjct: 596 LDPNLPKLALFATKDIKQNEEITFDYMCQSSKN 628


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -2

Query: 245 NHLQCTMGDNTQVK 204
           NH+   +GDN ++K
Sbjct: 318 NHISARVGDNVEIK 331


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,216
Number of Sequences: 438
Number of extensions: 5319
Number of successful extensions: 20
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)