Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30461
         (867 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam d...    29   4.0  
At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein si...    29   5.3  
At1g47390.1 68414.m05246 F-box family protein contains F-box dom...    28   7.0  
At1g73660.1 68414.m08530 protein kinase family protein contains ...    28   9.3  

>At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam domain
            PF04931: DNA polymerase V
          Length = 1306

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +2

Query: 125  PYVGNGLFGLALEHDSHLNIKYRRTLSLPVYYHPLYIVDDYEIKEFTVAD 274
            P++G+ LFG  LE   + N+++RR  +L +    L  +    I E T AD
Sbjct: 1178 PWIGHQLFGFLLEASVNANVEFRRLEALDLITETLRSL--IPINENTQAD 1225


>At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:899342 from [Nicotiana
           tabacum]
          Length = 363

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +2

Query: 155 ALEHDSHLNIKYRRTLSLPVYYHPLYIVDDYEIKEF-TVADYKNGIVNRFQCSNTGI 322
           A+E D+    +    L+  VYY P+Y    Y I+E     D+ N I   F  S+T I
Sbjct: 150 AIEDDAERTERMPLLLTAAVYYSPVYDSVSYPIREIKKKLDWVNLIAYDFYSSSTTI 206


>At1g47390.1 68414.m05246 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 370

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 176 LNIKYRRTLSLPVYYHPLYIVDDYEI 253
           +N     TL+LPV  HP Y +DD ++
Sbjct: 286 MNFMEVSTLNLPVLVHPSYFIDDKKL 311


>At1g73660.1 68414.m08530 protein kinase family protein contains
           Pfam profile: PF00069 eukaryotic protein kinase domain
          Length = 1030

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -3

Query: 547 ILTFRYWYHSCHNFIFFSVDALMQFYGLLN 458
           ++ +RYW ++C  +    +D     YG+LN
Sbjct: 181 LIAYRYWNYNCLGYDDKILDGFYDLYGVLN 210


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,036,352
Number of Sequences: 28952
Number of extensions: 354242
Number of successful extensions: 864
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2028915200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)