Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30460
(555 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac... 118 6e-28
SPCC1259.09c |||pyruvate dehydrogenase protein x component|Schiz... 89 4e-19
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon... 36 0.005
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom... 33 0.037
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 27 1.9
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po... 27 2.5
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo... 26 3.2
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 5.7
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa... 25 9.9
>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 483
Score = 118 bits (284), Expect = 6e-28
Identities = 58/103 (56%), Positives = 75/103 (72%), Gaps = 1/103 (0%)
Frame = +1
Query: 1 PALSPTMESGSIVSWEKKEGDKLSEGDLLCEIETDKATMGFETPEEGYLAKILIPAGTKG 180
PALSPTM +G+I +++KK GDK+ GD+LCEIETDKA + FE +EGYLAKILI GTK
Sbjct: 59 PALSPTMTTGNIGAFQKKIGDKIEPGDVLCEIETDKAQIDFEQQDEGYLAKILIETGTKD 118
Query: 181 VPVGKLLCIIVGDQNDVAAFKDFK-DDSSPATPQKPASQDKAA 306
VPVGK L + V ++ DVAA DF +DSS P + ++K+A
Sbjct: 119 VPVGKPLAVTVENEGDVAAMADFTIEDSSAKEPSAKSGEEKSA 161
Score = 30.3 bits (65), Expect = 0.20
Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = +2
Query: 419 RVYASPMARRLAEIKNIRLGG-QGTGLYGSLKSGDL 523
RV+ASP+AR+LAE K++ L +G+G G + D+
Sbjct: 185 RVFASPLARKLAEEKDLDLSQIRGSGPNGRIIKVDI 220
>SPCC1259.09c |||pyruvate dehydrogenase protein x
component|Schizosaccharomyces pombe|chr 3|||Manual
Length = 456
Score = 89.0 bits (211), Expect = 4e-19
Identities = 43/100 (43%), Positives = 63/100 (63%)
Frame = +1
Query: 1 PALSPTMESGSIVSWEKKEGDKLSEGDLLCEIETDKATMGFETPEEGYLAKILIPAGTKG 180
PALSPTME G+I W KEGD GD+L E+ETDKATM E + G LAK+LI G+
Sbjct: 41 PALSPTMEEGNITKWHFKEGDSFKSGDILLEVETDKATMDVEVQDNGILAKVLIEKGS-N 99
Query: 181 VPVGKLLCIIVGDQNDVAAFKDFKDDSSPATPQKPASQDK 300
+PVGK + I+ ++++ + KD++S +S+++
Sbjct: 100 IPVGKNIAIVADAEDNLKDLELPKDEASSEEQSFSSSKEE 139
>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
of oxoglutarate dehydrogenase complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 35.5 bits (78), Expect = 0.005
Identities = 14/57 (24%), Positives = 29/57 (50%)
Frame = +1
Query: 1 PALSPTMESGSIVSWEKKEGDKLSEGDLLCEIETDKATMGFETPEEGYLAKILIPAG 171
P ++ G++ W K+ G+ +++ + + +ETDK P+ G L + L+ G
Sbjct: 48 PPFPESITEGTLAQWLKQPGEYVNKDEEIASVETDKIDAPVTAPDAGVLKEQLVKEG 104
>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1185
Score = 32.7 bits (71), Expect = 0.037
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 25 SGSIVSWEKKEGDKLSEGDLLCEIETDKATMGFETPEEGYLAKILIPAG 171
SG+IV KEG K+ +GD++ + K + P G L + + G
Sbjct: 1122 SGTIVEIRVKEGAKVKKGDIIAVLSAMKMEIVISAPHSGVLKSLAVVQG 1170
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 27.1 bits (57), Expect = 1.9
Identities = 18/73 (24%), Positives = 31/73 (42%)
Frame = +1
Query: 1 PALSPTMESGSIVSWEKKEGDKLSEGDLLCEIETDKATMGFETPEEGYLAKILIPAGTKG 180
P T G +V + + G+ + G+ E+E K M E+G + I P +
Sbjct: 710 PTQLRTPSPGKLVRFLVETGEHIKAGEAYAEVEVMKMIMPLVATEDGVVQLIKQPGAS-- 767
Query: 181 VPVGKLLCIIVGD 219
+ G +L I+ D
Sbjct: 768 LDAGDILGILTLD 780
>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 26.6 bits (56), Expect = 2.5
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +1
Query: 61 DKLSEGD--LLCEIETDKATMGFETPEEGYLAKILIPAGTKGV 183
D+L G L + + DK + +ETP EGY +L+ A K V
Sbjct: 798 DQLQPGKVALFVDWQIDKFSFFYETPAEGY--NLLVEANEKSV 838
>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 739
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 110 QLWALRHLKKVTWPKY*FRPVQRECL 187
+LW L + K+VTW Y + R CL
Sbjct: 260 ELWCLLNDKRVTWKAYAGHWIARVCL 285
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.4 bits (53), Expect = 5.7
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 206 LLLEIRMMLRHSKISKMTHHLQHLK 280
L + + +L+HS I K+ H+LQ+ K
Sbjct: 4454 LNVSVSDILQHSSIEKLAHYLQYEK 4478
>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 24.6 bits (51), Expect = 9.9
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = +1
Query: 166 AGTKGVPVGKLLCIIVGDQNDVAAFKDFKDDSSPATPQKPASQDKAAAG 312
AGT PV K+ I ++D +D K+D P P A G
Sbjct: 23 AGTVTKPVTKMSSYIEDAESDAELPQDAKEDLRPTETLTPLKSKAAQNG 71
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,899,384
Number of Sequences: 5004
Number of extensions: 32593
Number of successful extensions: 88
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -