Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30460
         (555 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16687| Best HMM Match : No HMM Matches (HMM E-Value=.)             141   3e-34
SB_10000| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)                79   3e-15
SB_29025| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.002
SB_27288| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_14878| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_53601| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  
SB_31426| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  

>SB_16687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score =  141 bits (342), Expect = 3e-34
 Identities = 64/92 (69%), Positives = 79/92 (85%)
 Frame = +1

Query: 1   PALSPTMESGSIVSWEKKEGDKLSEGDLLCEIETDKATMGFETPEEGYLAKILIPAGTKG 180
           PALSPTME+G++VSWEK+EGD+L+EGDLL +IETDKATM FETPEEG++AKILIPAG+K 
Sbjct: 75  PALSPTMEAGTLVSWEKQEGDELAEGDLLAQIETDKATMEFETPEEGFIAKILIPAGSKD 134

Query: 181 VPVGKLLCIIVGDQNDVAAFKDFKDDSSPATP 276
           VP+GKLLCIIV ++ DV  FK+F  D +   P
Sbjct: 135 VPIGKLLCIIVPNKEDVDKFKNFTVDDAEGIP 166


>SB_10000| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
          Length = 382

 Score = 78.6 bits (185), Expect = 3e-15
 Identities = 35/52 (67%), Positives = 42/52 (80%)
 Frame = +1

Query: 19  MESGSIVSWEKKEGDKLSEGDLLCEIETDKATMGFETPEEGYLAKILIPAGT 174
           ME+G+IVSW KKEGD +  GD LCEIETDKAT+  +T E+G LAKI+IP GT
Sbjct: 1   METGTIVSWLKKEGDTIEPGDALCEIETDKATLTLDTDEQGVLAKIVIPPGT 52


>SB_29025| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 17/59 (28%), Positives = 33/59 (55%)
 Frame = +1

Query: 1   PALSPTMESGSIVSWEKKEGDKLSEGDLLCEIETDKATMGFETPEEGYLAKILIPAGTK 177
           P  + ++  G I  W++  GD ++E +++ EIETDK ++    P  G + ++ +  G K
Sbjct: 53  PPFAESVTEGDI-RWDQAVGDAVAEDEVVGEIETDKTSIPVTAPANGVIEELFVADGDK 110


>SB_27288| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 458

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +1

Query: 34  IVSWEKKEG-DKLSEGDLLCEIETDKATMGFETPEEGYLAKILIPAGTKGVPVGKLLCII 210
           ++++++++G  +  E D   E E       FET  E     + +PA   GV +G+    I
Sbjct: 24  VINFKRRQGLREYEEEDDEEETEQTSVATVFETSLE-----LKVPASVSGVIIGRGGANI 78

Query: 211 VGDQNDVAAFKDFKDDSSP 267
              Q +   + +FKDD  P
Sbjct: 79  KKIQKETGTYINFKDDDEP 97


>SB_14878| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 307

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = +2

Query: 161 FRPVQRECLSGNYCALLLEIRMMLRHSKISKMTHHLQHLKNR 286
           F PV   C SG  C LL E   M +   I      +QH + R
Sbjct: 143 FHPVIASCFSGPLCELLPEAACMDQEMLIQASGSSIQHQRYR 184


>SB_53601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 555

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 25  SGSIVSWEKKEGDKLSEGDLLCEIETDK 108
           +G ++    K GD ++EGD++ +IE  K
Sbjct: 526 TGKVIKVNYKAGDNVAEGDIMVQIEPVK 553


>SB_31426| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 89

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/32 (43%), Positives = 14/32 (43%)
 Frame = +1

Query: 43  WEKKEGDKLSEGDLLCEIETDKATMGFETPEE 138
           W  KEGD  SE    C IE D      E P E
Sbjct: 32  WYGKEGDVASEEHEECLIEDDAIIYNHENPHE 63


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,703,053
Number of Sequences: 59808
Number of extensions: 259707
Number of successful extensions: 643
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)