Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30459
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    29   0.68 
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    28   1.2  
SPBC25H2.08c |mrs2||magnesium ion transporter Mrs2|Schizosacchar...    26   4.8  
SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|...    26   4.8  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    26   6.3  
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe...    25   8.4  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    25   8.4  
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...    25   8.4  

>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -3

Query: 690 SNCFANESTTGSESRPAEKIRRETQRADAWVRLHVDLF 577
           S+C  +ES    ES PA K   E    D+W+    ++F
Sbjct: 299 SSCLLDESMVTGESVPARKFPLEDNSLDSWMIASCNIF 336


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +3

Query: 306 HDDLGLESIRKYMK-SASERYFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTD 482
           H+   +E  +K++   AS+R+ + +M   NR+I +    +P  +   +    R  H+L D
Sbjct: 318 HEAEFIEKQKKHLSIEASDRFKENSMWEKNRMITSGVSKAPGLESDYSLMEERRVHLLVD 377

Query: 483 PSDP 494
              P
Sbjct: 378 ELRP 381


>SPBC25H2.08c |mrs2||magnesium ion transporter
           Mrs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 698 NSRAIVSRMNLLPDRNRDPLRKSGEKLSGLMHGLG 594
           N R+     N++ D NR+ L   G KLS +  GLG
Sbjct: 312 NIRSTEEICNIMLDANRNSLMLLGLKLSAMTLGLG 346


>SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 211

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 330 IRKYMKSASERYFDKAMRHDNRLI 401
           IRKY+++  E  FDK  +  ++LI
Sbjct: 98  IRKYLETIEENEFDKVRKSSDKLI 121


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 406 PPLTTPRILIMQEPVTVDALDTSLRIHQIQ*PLH*MP 516
           PP+ +PR     +PV V+A+  S  +   Q PLH  P
Sbjct: 270 PPIPSPR---PPQPVAVEAIQQSRAVISQQLPLHVSP 303


>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 105 PMICKRSKMSLRNKVTLYK 161
           P ICK ++++L+N +TL K
Sbjct: 63  PTICKGNEIALKNNITLEK 81


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -2

Query: 508 NAKVIGSDGSVRTCLGRRR 452
           N++ +GS GS  T LGRRR
Sbjct: 3   NSRSVGSTGSNNTPLGRRR 21


>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +3

Query: 294 NVDLHDDLGLESIRKYMKSASERYFDKAMRHDN--RLIVAAADYS 422
           N++LH D    ++  +++ A + Y+   + H N  R ++   D S
Sbjct: 288 NIELHTDYAPHAVYNFVQLAKQGYYRNTIFHRNIARFMIQGGDPS 332


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,738,749
Number of Sequences: 5004
Number of extensions: 51699
Number of successful extensions: 144
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)