Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30459
         (728 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0050 + 18665251-18665613,18667280-18667744,18668548-186690...    31   0.94 
05_06_0241 - 26634632-26636263                                         29   3.8  
01_06_1724 - 39452858-39454309                                         28   6.6  
01_06_0265 - 28011181-28011240,28011298-28011375,28011493-280118...    28   8.7  

>11_05_0050 +
           18665251-18665613,18667280-18667744,18668548-18669037,
           18669115-18669143
          Length = 448

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 411 ADYSPNPDHAGASHRRRPRHVLTDPSDPITF 503
           AD  PNP  A  SH +   HV + P  P+ F
Sbjct: 132 ADICPNPQPAYMSHPKPNPHVFSSPCSPVVF 162


>05_06_0241 - 26634632-26636263
          Length = 543

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 19/63 (30%), Positives = 28/63 (44%)
 Frame = +3

Query: 279 PWFVRNVDLHDDLGLESIRKYMKSASERYFDKAMRHDNRLIVAAADYSPNPDHAGASHRR 458
           P + R+V LH  +      K + +  +R    AMR+    I    D   + D AG + RR
Sbjct: 104 PRYHRSVQLHKTIAYNGDAKALVATIKRQERLAMRNMAASIGCFLDADDSHDRAGRARRR 163

Query: 459 RPR 467
           R R
Sbjct: 164 RRR 166


>01_06_1724 - 39452858-39454309
          Length = 483

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 8   QVPGRYPGCIDDIPPAYKISP*PCRVY 88
           QVPG++P CI     AY++ P PC  Y
Sbjct: 333 QVPGQHPPCI-----AYQMPPPPCLAY 354


>01_06_0265 -
           28011181-28011240,28011298-28011375,28011493-28011802,
           28012913-28013533,28013733-28013818
          Length = 384

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 405 AAADYSPNPDHAGASHRRRPRHVLTDPSD 491
           +AA +SP  DHA A H     H  +D SD
Sbjct: 101 SAAAWSPARDHAHAHHNHHHHHHPSDSSD 129


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,120,888
Number of Sequences: 37544
Number of extensions: 381689
Number of successful extensions: 972
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)