Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30459
(728 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 114 1e-25
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 99 5e-21
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 99 5e-21
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 94 2e-19
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 93 3e-19
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 93 3e-19
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 91 1e-18
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 87 2e-17
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 87 2e-17
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 67 2e-11
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 67 2e-11
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 67 2e-11
AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein ... 67 3e-11
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 59 5e-09
U14102-1|AAC46495.1| 299|Drosophila melanogaster putative rever... 54 2e-07
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 54 2e-07
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 54 2e-07
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 54 2e-07
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 54 2e-07
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 54 2e-07
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 54 2e-07
X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein ( Dros... 38 0.014
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown protein.
Length = 908
Score = 114 bits (275), Expect = 1e-25
Identities = 60/157 (38%), Positives = 89/157 (56%)
Frame = +3
Query: 9 KYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTY 188
KYLGV LD +TF H+ +R R + + Y ++ RSK+SL NK+T+YK + P Y
Sbjct: 746 KYLGVLLDRRLTFSKHVTDIRTRLRAKVAKHYWLLSSRSKLSLSNKLTIYKQILAPNWKY 805
Query: 189 ASVVFAHAARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSASERYF 368
++ A +HI +Q++Q++ RL G WFVRN LH DL L ++ + S RY
Sbjct: 806 GCQIWGLACDSHIKRIQAIQNKVARLITGCEWFVRNTTLHRDLKLATVFDEINKHSSRYH 865
Query: 369 DKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLT 479
D+ RH NRL +A + S P +RR+PR ++T
Sbjct: 866 DRLERHRNRL-ASALNRSRPPRRL---NRRQPRDLIT 898
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 99.1 bits (236), Expect = 5e-21
Identities = 47/132 (35%), Positives = 78/132 (59%)
Frame = +3
Query: 3 KVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVM 182
+V YLGV LD +T+R HI++ L+ +I RS +SL K LY + ++P+
Sbjct: 735 EVTYLGVHLDRRLTWRKHIEAKSKHLKLKARNLHWLINARSPLSLEFKALLYNSVLKPIW 794
Query: 183 TYASVVFAHAARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSASER 362
TY S ++ +A+R++ID +Q QSR R+ GAPW++RN ++H DL ++ + + + +
Sbjct: 795 TYGSELWGNASRSNIDIIQRAQSRILRIITGAPWYLRNENIHRDLKIKLVIEVIAEKKTK 854
Query: 363 YFDKAMRHDNRL 398
Y +K H N L
Sbjct: 855 YNEKLTTHTNPL 866
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p protein.
Length = 888
Score = 99.1 bits (236), Expect = 5e-21
Identities = 47/132 (35%), Positives = 78/132 (59%)
Frame = +3
Query: 3 KVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVM 182
+V YLGV LD +T+R HI++ L+ +I RS +SL K LY + ++P+
Sbjct: 735 EVTYLGVHLDRRLTWRKHIEAKSKHLKLKARNLHWLINARSPLSLEFKALLYNSVLKPIW 794
Query: 183 TYASVVFAHAARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSASER 362
TY S ++ +A+R++ID +Q QSR R+ GAPW++RN ++H DL ++ + + + +
Sbjct: 795 TYGSELWGNASRSNIDIIQRAQSRILRIITGAPWYLRNENIHRDLKIKLVIEVIAEKKTK 854
Query: 363 YFDKAMRHDNRL 398
Y +K H N L
Sbjct: 855 YNEKLTTHTNPL 866
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p protein.
Length = 906
Score = 93.9 bits (223), Expect = 2e-19
Identities = 44/132 (33%), Positives = 76/132 (57%)
Frame = +3
Query: 3 KVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVM 182
+ KYLG+TLD +TF PH+K+ R + +L ++ ++S M+LR K +Y C+ P+
Sbjct: 750 QAKYLGITLDKRLTFGPHLKATTRRCYQRMQQLRWLLNRKSTMTLRAKRAVYVHCVAPIW 809
Query: 183 TYASVVFAHAARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSASER 362
Y ++ AA+++ + +Q LQ+R R P++VR LH DL L ++ + + + R
Sbjct: 810 LYGIQIWGIAAKSNYNRIQVLQNRAMRAITDCPYYVRGTTLHRDLNLHTVEEQISRHTSR 869
Query: 363 YFDKAMRHDNRL 398
Y D+ RH + L
Sbjct: 870 YSDRLRRHHSIL 881
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 93.5 bits (222), Expect = 3e-19
Identities = 48/155 (30%), Positives = 85/155 (54%), Gaps = 1/155 (0%)
Frame = +3
Query: 9 KYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTY 188
KYLG+TLD +TF HI +++ + R+ +I R+K+SL KV +YK+ + P + Y
Sbjct: 751 KYLGITLDRKLTFSRHITNIQQAFRTKVARMSWLIAPRNKLSLGCKVNIYKSILAPCLFY 810
Query: 189 ASVVFAHAARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSASERYF 368
V+ AA++H++ ++ LQ++ R GAPW++R D+ DL + + +++ +++Y
Sbjct: 811 GLQVYGIAAKSHLNKIRILQAKTLRRISGAPWYMRTRDIERDLKVPKLGDKLQNIAQKYM 870
Query: 369 DKAMRHDNRLIVAAADYS-PNPDHAGASHRRRPRH 470
++ H N L + N D RR RH
Sbjct: 871 ERLNVHPNSLARKLGTAAVVNADPRTRVKRRLKRH 905
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p protein.
Length = 718
Score = 93.5 bits (222), Expect = 3e-19
Identities = 48/155 (30%), Positives = 85/155 (54%), Gaps = 1/155 (0%)
Frame = +3
Query: 9 KYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTY 188
KYLG+TLD +TF HI +++ + R+ +I R+K+SL KV +YK+ + P + Y
Sbjct: 553 KYLGITLDRKLTFSRHITNIQQAFRTKVARMSWLIAPRNKLSLGCKVNIYKSILAPCLFY 612
Query: 189 ASVVFAHAARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSASERYF 368
V+ AA++H++ ++ LQ++ R GAPW++R D+ DL + + +++ +++Y
Sbjct: 613 GLQVYGIAAKSHLNKIRILQAKTLRRISGAPWYMRTRDIERDLKVPKLGDKLQNIAQKYL 672
Query: 369 DKAMRHDNRLIVAAADYS-PNPDHAGASHRRRPRH 470
++ H N L + N D RR RH
Sbjct: 673 ERLNVHPNSLARKLGTAAVVNADPRTRVKRRLKRH 707
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding protein,
3' end. ).
Length = 858
Score = 91.1 bits (216), Expect = 1e-18
Identities = 42/121 (34%), Positives = 73/121 (60%)
Frame = +3
Query: 3 KVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVM 182
+V YLGV LD +T+R HI++ + + L+ +I S +SL +KV LY + ++P+
Sbjct: 737 EVTYLGVHLDRRLTWRRHIEAKKTQLKLKANNLHWLINSGSPLSLDHKVLLYNSILKPIW 796
Query: 183 TYASVVFAHAARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSASER 362
TY S ++ +A+ ++ID +Q QS+ R GAPW+VR+ ++ DL + S+ + E+
Sbjct: 797 TYGSQLWGNASNSNIDIIQRAQSKILRTITGAPWYVRSENIQRDLNIPSVTNAITELKEK 856
Query: 363 Y 365
Y
Sbjct: 857 Y 857
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 87.0 bits (206), Expect = 2e-17
Identities = 36/111 (32%), Positives = 67/111 (60%)
Frame = +3
Query: 6 VKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMT 185
++YLG+ D +TF+ HI + + I+ LYP+I ++SK+S+ NK+ ++KT P++
Sbjct: 770 IRYLGIIFDKKLTFKYHINNTIMKVNKIICTLYPLINRKSKLSISNKIIIFKTIFNPILM 829
Query: 186 YASVVFAHAARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRK 338
Y S V+ A+THI LQ Q++ +L + P++ LH G++ +++
Sbjct: 830 YGSPVWGRCAQTHIKKLQICQNKLLKLIMNLPYYTNTKYLHIKAGVQKVQQ 880
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 87.0 bits (206), Expect = 2e-17
Identities = 36/111 (32%), Positives = 67/111 (60%)
Frame = +3
Query: 6 VKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMT 185
++YLG+ D +TF+ HI + + I+ LYP+I ++SK+S+ NK+ ++KT P++
Sbjct: 718 IRYLGIIFDKKLTFKYHINNTIMKVNKIICTLYPLINRKSKLSISNKIIIFKTIFNPILM 777
Query: 186 YASVVFAHAARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRK 338
Y S V+ A+THI LQ Q++ +L + P++ LH G++ +++
Sbjct: 778 YGSPVWGRCAQTHIKKLQICQNKLLKLIMNLPYYTNTKYLHIKAGVQKVQQ 828
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 67.3 bits (157), Expect = 2e-11
Identities = 37/145 (25%), Positives = 71/145 (48%), Gaps = 3/145 (2%)
Frame = +3
Query: 3 KVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVM 182
K +YLG+ LD +TF H+ ++ + +L +I K S + K+ L+K + P+
Sbjct: 807 KQRYLGLMLDRRLTFCAHMTLLKGKTIAAYKKLEWLIGKNSHLPKNAKILLWKQIVSPIW 866
Query: 183 TYASVVFAH-AARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSASE 359
YA ++ + T +Q++++++ R + A + R D+ ++S + AS+
Sbjct: 867 HYAIAIWGSLVSDTQAKKIQTMENKYIRRIINASRYTRQADIRTKYNIKSFDEIFDKASQ 926
Query: 360 RYFDKAMRHDNRLI--VAAADYSPN 428
RY + H+N LI + Y PN
Sbjct: 927 RYANSLTDHENPLIYDLLINAYKPN 951
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 67.3 bits (157), Expect = 2e-11
Identities = 37/145 (25%), Positives = 71/145 (48%), Gaps = 3/145 (2%)
Frame = +3
Query: 3 KVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVM 182
K +YLG+ LD +TF H+ ++ + +L +I K S + K+ L+K + P+
Sbjct: 807 KQRYLGLMLDRRLTFCAHMTLLKGKTIAAYKKLEWLIGKNSHLPKNAKILLWKQIVSPIW 866
Query: 183 TYASVVFAH-AARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSASE 359
YA ++ + T +Q++++++ R + A + R D+ ++S + AS+
Sbjct: 867 HYAIAIWGSLVSDTQAKKIQTMENKYIRRIINASRYTRQADIRTKYNIKSFDEIFDKASQ 926
Query: 360 RYFDKAMRHDNRLI--VAAADYSPN 428
RY + H+N LI + Y PN
Sbjct: 927 RYANSLTDHENPLIYDLLINAYKPN 951
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 67.3 bits (157), Expect = 2e-11
Identities = 37/145 (25%), Positives = 71/145 (48%), Gaps = 3/145 (2%)
Frame = +3
Query: 3 KVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVM 182
K +YLG+ LD +TF H+ ++ + +L +I K S + K+ L+K + P+
Sbjct: 807 KQRYLGLMLDRRLTFCAHMTLLKGKTIAAYKKLEWLIGKNSHLPKNAKILLWKQIVSPIW 866
Query: 183 TYASVVFAH-AARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSASE 359
YA ++ + T +Q++++++ R + A + R D+ ++S + AS+
Sbjct: 867 HYAIAIWGSLVSDTQAKKIQTMENKYIRRIINASRYTRQADIRTKYNIKSFDEIFDKASQ 926
Query: 360 RYFDKAMRHDNRLI--VAAADYSPN 428
RY + H+N LI + Y PN
Sbjct: 927 RYANSLTDHENPLIYDLLINAYKPN 951
>AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein
protein.
Length = 656
Score = 66.9 bits (156), Expect = 3e-11
Identities = 37/145 (25%), Positives = 71/145 (48%), Gaps = 3/145 (2%)
Frame = +3
Query: 3 KVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVM 182
K +YLG+ LD +TF H+ ++ + +L +I K S + K+ L+K + P+
Sbjct: 360 KQRYLGLMLDRRLTFCAHMTLLKGKTIAAYKKLEWLIGKNSHLPKNAKILLWKQIVSPIW 419
Query: 183 TYASVVFAH-AARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSASE 359
YA ++ + T +Q++++++ R + A + R D+ ++S + AS+
Sbjct: 420 HYAIAIWGSLVSDTQAKKIQTMENKYIRRIINASRYTRQADIRTKYNIKSFDETFDKASQ 479
Query: 360 RYFDKAMRHDNRLI--VAAADYSPN 428
RY + H+N LI + Y PN
Sbjct: 480 RYANSLTDHENPLIYDLLINAYKPN 504
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 59.3 bits (137), Expect = 5e-09
Identities = 35/145 (24%), Positives = 69/145 (47%), Gaps = 3/145 (2%)
Frame = +3
Query: 3 KVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVM 182
K YLGVTLD+ +T H+ + + + +L ++ RSK+ + K+ + K+ + P+
Sbjct: 808 KQSYLGVTLDSKLTLSSHVTKLLGKYSTAYRKLTWILNGRSKLPTKTKILILKSVLSPIW 867
Query: 183 TYASVVFAH-AARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSASE 359
YA + I +Q ++R R A + RN + D G++++ ++ + A
Sbjct: 868 QYAIAAWGPLVTDAQIRRVQVEENRKIRDICRAGRYTRNQTIRDLFGVKTVEEFYQQAMH 927
Query: 360 RYFDKAMRHDNRLI--VAAADYSPN 428
R+ + H N + + + Y PN
Sbjct: 928 RFSETIKSHPNIAVRRILSRHYIPN 952
>U14102-1|AAC46495.1| 299|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 299
Score = 54.4 bits (125), Expect = 2e-07
Identities = 32/145 (22%), Positives = 66/145 (45%), Gaps = 3/145 (2%)
Frame = +3
Query: 3 KVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVM 182
K YLGV LD+ +T H+ + + ++ ++ +RSK+ + K+ + K+ + P+
Sbjct: 11 KQSYLGVILDSKLTLSSHVTKLMGKYTTAYRKMTWILNRRSKLPTKTKMLILKSVLSPIW 70
Query: 183 TYASVVFAH-AARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSASE 359
YA + I +Q ++R R A + N + D G++++ ++ + A
Sbjct: 71 QYAIAAWGPLVTDAQIRRIQVEENRKMRDICRAGRYTSNQTIRDRYGIKTVEEFYQQALH 130
Query: 360 RYFDKAMRHDNRLI--VAAADYSPN 428
R+ + H N + + Y PN
Sbjct: 131 RFSETIKSHPNIAVRRIFTRHYIPN 155
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 54.4 bits (125), Expect = 2e-07
Identities = 32/145 (22%), Positives = 66/145 (45%), Gaps = 3/145 (2%)
Frame = +3
Query: 3 KVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVM 182
K YLGV LD+ +T H+ + + ++ ++ +RSK+ + K+ + K+ + P+
Sbjct: 796 KQSYLGVILDSKLTLSSHVTKLMGKYTTAYRKMTWILNRRSKLPTKTKMLILKSVLSPIW 855
Query: 183 TYASVVFAH-AARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSASE 359
YA + I +Q ++R R A + N + D G++++ ++ + A
Sbjct: 856 QYAIAAWGPLVTDAQIRRIQVEENRKMRDICRAGRYTSNQTIRDRYGIKTVEEFYQQALH 915
Query: 360 RYFDKAMRHDNRLI--VAAADYSPN 428
R+ + H N + + Y PN
Sbjct: 916 RFSETIKSHPNIAVRRIFTRHYIPN 940
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial cds.
).
Length = 964
Score = 54.4 bits (125), Expect = 2e-07
Identities = 33/145 (22%), Positives = 67/145 (46%), Gaps = 3/145 (2%)
Frame = +3
Query: 3 KVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVM 182
K YLGV LD+ +T PH+ V + ++ ++ +RSK+ K+ + K+ + P+
Sbjct: 680 KQSYLGVILDSKLTLSPHVTKVVGKYLTAYRKMSWILNERSKLPTNTKMLILKSVLSPIW 739
Query: 183 TYASVVFAH-AARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSASE 359
YA + I +Q ++R R A + +N + D ++++ ++ + A
Sbjct: 740 QYAIAAWGPLVTDAQIRRIQVEENRKMRDICRAGRYTKNQTIRDRYCVKTVEEFYQQAVH 799
Query: 360 RYFDKAMRHDNRLI--VAAADYSPN 428
R+ + H N + + + Y PN
Sbjct: 800 RFSETTKSHPNVAVRRIFSRHYIPN 824
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 54.4 bits (125), Expect = 2e-07
Identities = 33/145 (22%), Positives = 67/145 (46%), Gaps = 3/145 (2%)
Frame = +3
Query: 3 KVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVM 182
K YLGV LD+ +T PH+ V + ++ ++ +RSK+ K+ + K+ + P+
Sbjct: 796 KQSYLGVILDSKLTLSPHVTKVVGKYLTAYRKMSWILNERSKLPTNTKMLILKSVLSPIW 855
Query: 183 TYASVVFAH-AARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSASE 359
YA + I +Q ++R R A + +N + D ++++ ++ + A
Sbjct: 856 QYAIAAWGPLVTDAQIRRIQVEENRKMRDICRAGRYTKNQTIRDRYCVKTVEEFYQQAVH 915
Query: 360 RYFDKAMRHDNRLI--VAAADYSPN 428
R+ + H N + + + Y PN
Sbjct: 916 RFSETTKSHPNVAVRRIFSRHYIPN 940
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 54.4 bits (125), Expect = 2e-07
Identities = 33/145 (22%), Positives = 67/145 (46%), Gaps = 3/145 (2%)
Frame = +3
Query: 3 KVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVM 182
K YLGV LD+ +T PH+ V + ++ ++ +RSK+ K+ + K+ + P+
Sbjct: 796 KQSYLGVILDSKLTLSPHVTKVVGKYLTAYRKMSWILNERSKLPTNTKMLILKSVLSPIW 855
Query: 183 TYASVVFAH-AARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSASE 359
YA + I +Q ++R R A + +N + D ++++ ++ + A
Sbjct: 856 QYAIAAWGPLVTDAQIRRIQVEENRKMRDICRAGRYTKNQTIRDRYCVKTVEEFYQQAVH 915
Query: 360 RYFDKAMRHDNRLI--VAAADYSPN 428
R+ + H N + + + Y PN
Sbjct: 916 RFSETTKSHPNVAVRRIFSRHYIPN 940
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 54.4 bits (125), Expect = 2e-07
Identities = 33/145 (22%), Positives = 67/145 (46%), Gaps = 3/145 (2%)
Frame = +3
Query: 3 KVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVM 182
K YLGV LD+ +T PH+ V + ++ ++ +RSK+ K+ + K+ + P+
Sbjct: 758 KQSYLGVILDSKLTLSPHVTKVVGKYLTAYRKMSWILNERSKLPTNTKMLILKSVLSPIW 817
Query: 183 TYASVVFAH-AARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSASE 359
YA + I +Q ++R R A + +N + D ++++ ++ + A
Sbjct: 818 QYAIAAWGPLVTDAQIRRIQVEENRKMRDICRAGRYTKNQTIRDRYCVKTVEEFYQQAVH 877
Query: 360 RYFDKAMRHDNRLI--VAAADYSPN 428
R+ + H N + + + Y PN
Sbjct: 878 RFSETTKSHPNVAVRRIFSRHYIPN 902
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 54.4 bits (125), Expect = 2e-07
Identities = 33/145 (22%), Positives = 67/145 (46%), Gaps = 3/145 (2%)
Frame = +3
Query: 3 KVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVM 182
K YLGV LD+ +T PH+ V + ++ ++ +RSK+ K+ + K+ + P+
Sbjct: 796 KQSYLGVILDSKLTLSPHVTKVVGKYLTAYRKMSWILNERSKLPTNTKMLILKSVLSPIW 855
Query: 183 TYASVVFAH-AARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSASE 359
YA + I +Q ++R R A + +N + D ++++ ++ + A
Sbjct: 856 QYAIAAWGPLVTDAQIRRIQVEENRKMRDICRAGRYTKNQTIRDRYCVKTVEEFYQQAVH 915
Query: 360 RYFDKAMRHDNRLI--VAAADYSPN 428
R+ + H N + + + Y PN
Sbjct: 916 RFSETTKSHPNVAVRRIFSRHYIPN 940
>X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type I retrotransposable
element R1Dm. ).
Length = 1021
Score = 37.9 bits (84), Expect = 0.014
Identities = 20/69 (28%), Positives = 35/69 (50%)
Frame = +3
Query: 9 KYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTY 188
+YLG+T+ M F HI S+R R ++G L ++ S R + T+Y + P + +
Sbjct: 735 RYLGITVSEGMKFLTHIASLRQRMTGVVGALARVLRADWGFSPRARRTIYDGLMAPCVLF 794
Query: 189 ASVVFAHAA 215
+ V+ A
Sbjct: 795 GAPVWYDTA 803
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,317,223
Number of Sequences: 53049
Number of extensions: 630551
Number of successful extensions: 1358
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1354
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3273062859
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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