Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30459
         (728 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g32170.1 68415.m03932 expressed protein ;supported by cDNA GI...    33   0.26 
At2g45480.1 68415.m05656 expressed protein                             29   2.4  
At3g01030.1 68416.m00004 zinc finger (C2H2 type) family protein ...    29   4.2  
At2g33350.1 68415.m04088 hypothetical protein                          28   7.3  
At2g02310.1 68415.m00169 F-box family protein / SKP1 interacting...    28   7.3  
At3g59020.1 68416.m06578 importin beta-2 subunit family protein ...    27   9.6  
At3g52600.1 68416.m05794 beta-fructosidase, putative / beta-fruc...    27   9.6  
At1g15770.1 68414.m01892 expressed protein                             27   9.6  

>At2g32170.1 68415.m03932 expressed protein ;supported by cDNA
           GI:20259498
          Length = 504

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = -1

Query: 275 PDS*PAKAGL*GLEGVYVCAGRVSEHHTRVSHDGPYASFVKCHLVPKGH 129
           PD  PA AG+   EG  +C G   E +   SH G + + V C  +   H
Sbjct: 361 PDIHPASAGI--TEGFSMCGGDFVEVYNESSHAGMWDAVVTCFFIDTAH 407


>At2g45480.1 68415.m05656 expressed protein
          Length = 429

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
 Frame = +3

Query: 186 YASVVFAHAARTHIDTLQSLQSRFCRLAVGAPW--------FVRNVDLHDDLGLESIRKY 341
           ++S + ++   THIDTL++  +R CR   G  W        F +  + H   G +  RK 
Sbjct: 70  HSSSLLSNKGVTHIDTLETEPTR-CRRTDGKKWRCSNTVLLFEKYCERHMHRGRKRSRKL 128

Query: 342 MKSASERYFDKAMRHDN 392
           ++S+SE     + ++DN
Sbjct: 129 VESSSE-VASSSTKYDN 144


>At3g01030.1 68416.m00004 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 353

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 318 GLESIRKYMKSASERYFDKAMRHDNRLIVAAADYSPNPDHAGAS 449
           GLE   K + S   ++ D  +R++ RL+  A D +P     G S
Sbjct: 175 GLEHFGKALGSTQRKFEDGLLRNEQRLVGEALDSNPEKKLVGIS 218


>At2g33350.1 68415.m04088 hypothetical protein
          Length = 440

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 324 ESIRKYMKSASERYFDKAMRHDNRLIVA 407
           E IR+YMK  +ER F+K +++  R  +A
Sbjct: 343 EKIRRYMKKRNERNFNKKIKYACRKTLA 370


>At2g02310.1 68415.m00169 F-box family protein / SKP1 interacting
           partner 3-related contains similarity to SKP1
           interacting partner 3 GI:10716951 from [Arabidopsis
           thaliana]
          Length = 307

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -3

Query: 684 CFANESTTGSESRPAEKIRRETQRADAWVRLHVDLFVEFDEYGYRG 547
           CF +EST  ++  P +K+ +  +R D W+   +  F  F++ G  G
Sbjct: 232 CF-DESTDKTKEWPKKKLMKSKKRGDGWMEAEIGDF--FNDGGLMG 274


>At3g59020.1 68416.m06578 importin beta-2 subunit family protein
           similar to D-Importin 7/RanBP7 [Drosophila melanogaster]
           GI:7542336; contains Pfam profile PF03810: Importin-beta
           N-terminal domain
          Length = 1112

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 396 LIVAAADYSPNPDHAGASHRRRPRH 470
           LIV AA +SPNPD   A+ +   +H
Sbjct: 8   LIVGAAAFSPNPDERRAAEQSLNQH 32


>At3g52600.1 68416.m05794 beta-fructosidase, putative /
           beta-fructofuranosidase, putative similar to
           beta-fructofuranosidase [Daucus carota] GI:18324
          Length = 590

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 420 SPNPDHAGASHRRRPRHVLTDPSDPITF 503
           S +P H  A H + PRH + DP+ P+ +
Sbjct: 42  SVSPLHRTAYHFQPPRHWINDPNAPMLY 69


>At1g15770.1 68414.m01892 expressed protein
          Length = 332

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -1

Query: 218 AGRVSEHHTRVSHDGPYASFVKCHLVPKGHFTPLTDHGVESTEN 87
           AG V    +R S      +  KCHL  +   T   DH  E+++N
Sbjct: 265 AGSVPGKGSRASFGVDLVAMTKCHLQERNFMTQDGDHEKEASDN 308


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,702,233
Number of Sequences: 28952
Number of extensions: 281649
Number of successful extensions: 689
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)